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Date: 2006/02/17 11:15:55, Link 128.100.72.100
Author: incorygible
Quote (stevestory @ Feb. 17 2006,16:44)
Quote
I'm not sure if the units of "specified complexity" have ever been named. Someone suggested "Dembskis", (kilodembskis, megadembskis, etc)
I have, one time, seen Dembski refer to bits of CSI. I think it was in the paper where Elsberry and Shallit beat him like a rented mule.

Hmm...then how 'bout "Dembskits" (or just 'skits -- as in "street theater" -- or "skittles")?

Date: 2006/02/20 04:33:59, Link 128.100.72.100
Author: incorygible
Quote (stevestory @ Feb. 20 2006,09:42)
Quote
One thing that has always irked me is that rarely >>>ON THIS SITE<<< do we find any critics of ID attempting to challenge the tools/methods of ID directly..
is he really that ignorant of the literature? Somebody send him Why Intelligent Design Fails, Unintelligent Design, that Ellsberry and Shallit paper, etc etc etc please.

Note the get-out-of-learning-free card. Kinda like Dick Cheney opining that no one will be his huntin' buddy, isn't it?

Date: 2006/02/20 12:03:02, Link 128.100.72.100
Author: incorygible
If you're feeling particularly masochistic...

Given Davison's latest complaints on his blog, wherein he attempts to describe the contents of the post for which he was banned, I think it is actually still accessible.  While the "Nuclear Evolution Debate - No Takers Yet" post contains Davison's complaint and DaveScot's reply (but not the offending post), the "Nuclear Evolution Debate" link on the right side of the main page links to a post with a comment from Davison exactly as he describes.

If so, it appears that the comment was not "lewd" in the general sense, but merely describes Behe and Wells as lacking conviction. I certainly couldn't find anything "lewd" about it, by which I mean nothing beyond the usual JAD sideshow.

So far, it seems even Davison is unaware that his post is still visible...he claims even DaveScot did not see it.

Date: 2006/02/24 05:47:11, Link 128.100.72.100
Author: incorygible
Quote
Someday someone will stand up for the reproduction rights of men.

IOW somewhere a woman will get pregnant and want an abortion. But the man will not.


The latest comment on this highly entertaing thread.  Just...wow.  Nevermind that I'm pretty sure, someone(s), somewhere(s) has tried that (several times).  What I want to know is this...

Exactly where does "design detection" (purely scientific, absent any designer, etc.) support the "reproductive rights of men"?  I know the ancient texts tentatively linked to one reported designer have often been used to justify this, but we're not talking about him, are we?  I must have missed the fancy Dembski math showing that bacterial flagellum = irreducible complexity = intelligent design = right-wing culture war = abortion is bad.

Date: 2006/03/22 10:52:40, Link 128.100.72.100
Author: incorygible
Quote
#

Let me summarize:
Faust: Thoroughly inappropriate for that age group.
Christmas Carols: Perfectly appropriate for that age group.
Teacher: Silly and deserving of the walking papers.
Is there really any more to be said?

Comment by Scott — March 22, 2006 @ 11:50 am


Hmm...lyrics of the first Christmas Carol that came to mind:

God rest ye merry, gentlemen
Let nothing you dismay
Remember, Christ, our Saviour
Was born on Christmas day
To save us all from Satan's power
When we were gone astray


Er...where are the shouts of devil worship now?  What makes the dichotomy so easy for Scott?  (By the way, note the obvious strawman...this was never about the propriety of Christmas Carols, nor the impropriety of Faust...it was about shrill, false, slanderous accusations that cost a woman her job because she was not "Christian enough".)

Also, the last stanza doesn't sound too tolerant of the other faiths it might have been presented along with, in DaveScot's perfect world:

Now to the Lord sing praises,
All you within this place,
And with true love and brotherhood
Each other now embrace;
This holy tide of Christmas
All other doth deface.

Date: 2006/04/27 08:51:34, Link 128.100.72.100
Author: incorygible
Quote (beervolcano @ April 27 2006,13:20)
But since when is Howard Stern a poster child for the left?   No really? ???
I don't think too many femisists would agree.

Even if we (for the sake of argument) accept Howard Stern as the "liberal" equivalent of Coulter, so what?  Until I see his mug on the cover of Nature or TREE (and his paper inside), this assinine statement doesn't even qualify as tu quoque.  Isn't it amazing how easy it is for davetard to confuse science and politics?  Is gravity liberal or conservative?

Date: 2006/05/01 09:03:54, Link 128.100.72.100
Author: incorygible
Colbert's "All You Need To Know" for the lurkers (or, "I read 25 pages so you don't have to"):

Many filthy liberals in this debate have proposed that, when it comes to state-sanctioned marriage contracts, "two consenting adult persons" could be appropriately substituted as functionally equivalent to "one man and one woman".  Whether you agree or disagree with this equivocation on religious/political/moral/arbitrary grounds, there is no denying that it considers gay men and women to be individuals of equal legal status to each other and to heterosexuals.  And oh yeah, one more thing, in case you think it should be obvious: it considers gay men and women to be non-criminal HUMANS.

Meanwhile, thordaddy proposes that any substitution for "one man and one woman" (including the above-mentioned "two consulting adult persons") is functionally equivalent to "one man and one sheep".  (He has mentioned other strange scenarios, but seems to like sheep best, so let's go with sheep.)  Whether or not you agree or disagree with his position on relgious/political/moral/agricultural grounds, there is no denying that his argument equivocates gay men (and women? do women like sheep?) as both (a) criminals (at least until the damned liberals succeed in repealing those bestiality laws), and (b) animals (which, no matter how much you like animals, remain undeniably inhuman).

Both thordaddy and those patient/insane/bored enough to argue with him have levelled charges of bigotry against each other.

You decide.

Date: 2006/05/02 05:18:54, Link 128.100.72.100
Author: incorygible
Quote (thordaddy @ May 02 2006,01:48)
You MUST accept ANY and ALL ADULT unions that seek state sanction.

For chrissake, thordafty, stop disassembling.  Somewhere in that sclerotic cranium of yours, even you know that restricted freedoms are not "discriminatory" nor "bigoted", provided they are restricted equally and objectively.  If your vote is not counted because you are a woman, that's discrimination.  If your vote is not counted because you failed to register, voted for two candidates, aren't actually a citizen of the country, or happen to be a sheep, it's not.  See how that works?  Or did allowing women to vote open the door to sheep ballots?  In any case, let's take this slow, mmmkay?

By your own words, you've taken care of the sheep problem you keep returning to.  Sure, it may be an ADULT sheep, but I presume you actually mean adult human here. (Or am I presuming too much?)  A sheep does not have legal standing, cannot give consent, cannot enter into a binding legal agreement, etc. ad nauseum. Neither does a minor. This restriction is reasonable and non-discriminatory, not to mention bloody neccessary for a legal agreement. That takes care of bestiality.

Now, on to bigamy/polygamy. Once again, let's remember that marriage is a legal contract with accompanying legal and economic responsibilities and privileges sanctioned by the state. It is a legal agreement between TWO (and only two) parties.  While this may seem arbitrary (if you're an idiot), it is readily defensible on objective legal grounds.  For any citizen, the state is only willing to recognize and grant those privileges to one person of his or her choosing. You can have ONE power of attorney.  You can have ONE lawfully wedded partner. Stop for a second to think about tax, divorce, inheritance, etc., and it becomes pretty clear.  Want to shack up with four other guys or girls and have nightly orgies?  Go right ahead.  But if you want to engage in a binding legal agreement conferring the responsibilities and privileges of marriage, pick ONE. This is no more "biogoted" or "discriminatory" than anything else in contract or tax law, provided that every citizen has equal discretion when it comes to choosing which one other party with whom to enter the agreement.  You know, like the person they love and actually want to marry...wouldn't it be nice if everybody could enter into marriage with the one person they love? Too bad that's not the current case, eh?  

Which leaves us with incest.  In any realistic scenario (i.e., those in the mind of anybody but thordiddly), this is hardly likely to be an issue.  The objective basis and long history of laws against incest are rooted in biology. (Pssstt...thor...those deviant homos are no more likely to screw their brother than you are to screw your sister...or am I being too presumptuous again?)  For the rare individual who doesn't have this inborn self-imposed restriction on their desires, we're sorry, but it's illegal. The objective reason for this is obvious when it comes to heterosexual marriage and resulting children.  But  the law doesn't stop there (i.e., two sterile heterosexual siblings cannot wed), and neither could two homosexual siblings.  Why not? (I.e., if potential genetic disorders through inbreeding are not at issue?)  Frankly, this rarest of the rare situation (two family members who wish to marry and physically cannot bear offspring) may be a gray area, objectively speaking, since it has little potential of harming a non-consenting third party (whereas bestiality, pedophilia, and unions between fertile siblings may cause such harm without consent) and does not confer additional legal benefits to a select group (whereas bigamy/polygamy would confer such additional benefits). However, again likely based largely on our biology (e.g., look up gender-biased dispersal in animals), it is not a union society or the state will sanction, given the complications and ramifications. This may (arguably) be "arbitrary", but refusing to sanction this union is no more "discriminatory" than refusing to sanction relationships between doctors and patients, teachers and students, or coworkers in certain situations. Fertile straight people can't marry their siblings, nor can sterile straight people, and nor will gay people. This still provides equal opportunity to all individuals when choosing a partner and entering into the marriage contract.  If you fear a movement of sister-loving lesbians or brother-loving homos in a progressive society that allows gay marriage, you're beyond help.

So, now that we've established why your red herrings are red, perhaps you can provide an objective rationale as to why two consenting adults with equal status under the law cannot form a legal partnership based purely on plumbing?  (Hint: if the word "traditional" appears in your answer, you fail.)

You've been asked before.  You didn't answer then, and you won't now.

Date: 2006/05/02 09:26:10, Link 128.100.72.100
Author: incorygible
:03-->
Quote (The Ghost of Paley @ May 02 2006,14:03)
incorygible:
Quote
Which leaves us with incest...

And that's one of the problems I have with gay marriage...

Wow.  Never have I had something I wrote in any way connected (however loosely) which such paranoid drivel.  Good thing the quote and your reply is such an obvious, head-scratching non sequitur -- otherwise I'd be worried.

Date: 2006/05/02 18:42:51, Link 24.42.173.36
Author: incorygible
Quote (The Ghost of Paley @ May 02 2006,18:53)
cory:
Welcome to America. What you call "paranoia" already happens in public schools:

Uh...sure.  I believe you.  Rest assured, I've been watching warily from a (hopefully) safer vantage north of the border (where we, for the moment, allow gay marriage and a whole host of other subversive things, and don't appear to have quite the same problems -- at least not within an order of magnitude).  I never blamed you for being alarmed when it came to the world around you.  The charge of "paranoia" (not to mention non sequitur) that I levelled is manifested in your apparent implication (so far woefully unsubstantiated) of a  link between gay marriage and violent/sociopathic behaviour.  Having been known to roll my eyes at MTV (we have but just received that particular import here in the frigid north, though we've had our uniquely Soviet-Canuckistani analogue for a while) I might be willing to forgive the implied link between 50 Cent and 9 MMs (though I don't subscribe to it myself).  But where does gay marriage come in?  Shouldn't this terrible threat of suburban gay married teenage gangbangers be more prevalent here where we, while not smiling, at least frown a little less at the Adams and Steves of the world?  Newsflash: we're still alive and kicking, thanks.  Maybe the hockey and (real) beer dull the senses and soothe the savage beasts.  Speaking of which, I think I'll leave this little debate in favour of more fruitful battles...I'd certainly rather watch men with sticks in their hands and blades on their feet wail on each other with wild abandon than have to read one more post from thordaddy.  All the best, Ghost.

C.

Date: 2006/05/05 11:00:09, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 05 2006,13:28)
Thanks.  When is uni-directional reading important?  And when is it not?  I think I saw someone say that it is important for some things.  I'm trying to understand where exactly the AIG author went wrong. (other than the jokes about they woke up that morning, they went Creo, etc.)  :-)

Afdave,

As to where the AIG author went wrong, Flint's answer above is probably most accurate.  More superficially, however, he seems to have confused a chromosome with a single strand of DNA. DNA strands are paired in chromosomes, but only single strands are transcribed (as the AIG author notes, in one direction only).  The author's elementary mistake (a high-school student would know better) led him to the wrong conclusion about a "head-to-head" fusion being read "backwards".

Let's work it out so you can see for yourself.

Our simplistic AIG author (erroneously) imagined two single strands of DNA, say, ACGCTA and GGAACT, and realized that if these two strands were fused "head-to-head" vs. "head-to-tail", ACGCTAGGAACT would transribe a different product than ACGCTATCAAGG.

Of course, this simplification was completely wrong, as any high-school biology student could point out: chromosomes are paired strands of DNA that only 'fit together' in 5' to 3' backbones.

Here is the correct situation.

Suppose we start with two simplified "chromosomes" of 6 base-pairs each, with each of those 6 base units coding for a protein product (1-4):

Chromosome a:
3' ACTGAG 5' (Protein 1)
5' TGACTC 3' (Protein 2)

Chromosome b:
3' CGCAGT 5' (Protein 3)
5' GCGTCA 3' (Protein 4)

So our four 'proteins' are 'read' (3' - 5' remember) from the sequences ACTGAG (1), CTCAGT (2), CGCAGT (3), and ACTGCG (4).

Note that the DNA backbone fits together 5' - 3' (see the above diagram), so if these two chromosomes were to fuse, it would be by matching a 5' end with a 3' end.

Here's where the AIG author goes wrong -- he notices that our new fused chromosome has two potential forms (assuming it fuses in the order a - b, otherwise it's four, but I'll stick to two because it makes no difference). I've noted the point of fusion with a dash.

By matching 5' to 3', chromosome ab could look like:

3' ACTGAG-CGCAGT 5'
5' TGACTC-GCGTCA 3'

OR the "inverted" (note this term has no real meaning, nor does "head-to-head" in the AIG Author's sense)

3' ACTGAG-ACTGCG 5'
5' TGACTC-TGACGC 3'

Looking at the proteins transcribed by each of the potential fused chromosomes, you'll see that they would result in identical gene products (read the sequences from 3' to 5', and substitute our protein numbers above):

3' 1-3 5'
5' 2-4 3'

vs.

3' 1-4 5'
5' 2-3 3'

So you can see, all the 'genes' are read correctly and transcribed for the chromosome as a whole, and our AIG author didn't think too hard (at all?) about the windmill he was tilting at.

Of course, this is all very simplistic (I've kinda skipped the whole RNA thing, etc.).  If you want a more accurate picture, sketch out 'chromosomes' that are more than one 'protein' long.  Or better yet, as you've been advised before, open a biology textbook and really learn how this stuff works (knowing more than an AIG author doesn't cut it).  You'll also figure out all kinds of interesting things, like why chromosomal recombination (mixing up heads and tails happens relatively frequently during sex ;) ) can be severe if it occurs in the middle of a coding region (as opposed to outside it).  Open the book, sketch it out, and see for yourself.  (Hint: how would the result be different if 1, 2, 3 and 4 weren't independent genes/gene-products, but parts of the same gene/product? What would that mean for the 1-3 vs. 1-4 chromosomal arrangements shown above?)

(Edited a few times to make it as clear as possible.)

Date: 2006/05/06 00:18:38, Link 24.42.173.36
Author: incorygible
Quote (afdave @ May 05 2006,23:18)
'm not asking anyone to teach me to BE a molecular biologist.  I'm just trying to find the truth about certain biological realities by relying on supposed experts on both sides of the controversy.  I think people on both sides are necessarily a little biased toward their own viewpoint, but I trust that each strives for the truth as best they know how.  I enjoy hearing from you guys, and up until this little incident, I have found AIG to be reliable.  One would think a medical doctor at AIG would be a reliable source, and in all fairness to him, he may be reliable in many areas.  And I'm not ready to call him a liar until I hear his side of the story.  We have seen that Dr. LeJeune was mistaken about Down's syndrome as well--it happens.

Thanks 'incorygible' for the detailed explanation.  I would be interested to hear Alan Fox and Jeannot's comments on incorygible's explanation and also would like to know what your specialties are.

Thanks!

*sigh* You recognize your question is one of "biological realities", and yet still insist on investigating "both sides of the controversy". You don't need expert opinion or punditry here, afdave; you need education. I (and others) tried to point you in the right direction, showing you why the source of your argument was woefully in error when it came to the absolute basics. That direction was to a biology textbook for the mechanics of DNA transcription, etc. Your question isn't about origins, ID, or evolution; it's about basic microbiology (sorry...I think AiG would term it "operational science" as opposed to "historical science", right?). If, after all this, you insist on playing "he said, she said" with a biology text and an AiG screed, well, best of luck. If it's credentials you're after, I'm sure AiG has a few touted PhDs in something or other that will put my lowly and damning MSc in evolutionary ecology to shame and justify your ignorance.

Date: 2006/05/08 08:18:02, Link 128.100.72.100
Author: incorygible
Dave, let's assume for the sake of argument that "guilt by association" is an effective, rational strategy upon which to base one's decisions (as opposed to pure fallacious rhetoric). Let's assume for the sake of argument that Hitler rooted much of his 'politics' in evolutionary theory (I don't agree with this, but I'm willing to stipulate it for this game). Let's assume Godwin didn't know what the #### he was talking about when it came to rational discourse.  To #### with it all -- let's play Hitler ping-pong!

If we accept that Hitler's ascendancy was based on an evolutionary argument (and the lay support of that argument), then you must concede that it was woefully in error.  As everyone with an ounce of understanding in evolutionary theory has pointed out to you (to your dumbfound surprise), there is no such thing as Darwin's Chosen Race (be it human civilization, species, genus, kingdom, whatever), though if the title had to be granted, I think it's a race between bacteria and beetles, with bacteria leading in the polls). It's been pointed out to you that there simply is no such thing as "less evolved".  So if Hitler "did it for evolution", he was wrong. Recently, you seem to have acknowledged this.

So let's play Hitler ping-pong, you versus me. I can show a recent, specific instance where you willingly accepted (positively trumpeted) an argument for a specific religious/political stance (can we call that propaganda, Dave?) that was BASED ON (i.e., did not just reference) an elementary "mistake" in evolutionary biology from which all arguments simply could not follow (they probably wouldn't have followed from even a correct understanding of microbiology, but that's beside the point). Furthermore, one merely has to read this thread to see that you believe in an "evolutionary ladder", where certain human cultures and species are "more evolved", and hence superior.  Everyone on the "evolution side" of this debate rejects this nonsense, and you seemed absolutely shocked to find out there are people who don't see life on this planet in such a straightforward hierarchical fashion. Dave, when evolutionary biologists use the term 'primitive' (if they use it at all), they mean only an identifiable trait that came first chronologically.  They do not attach the subjective baggage of superiority to it that you do.  This kind of miscommunication occurs often between those educated in evolutionary biology and those who think they understand it from the ladder-type early hominid drawings in museums, "good of the species" Animal Kingdom shows, and AiG screeds.

So on which side falls Hitler, Dave?  I think it'd be fair to say that the...ahem...ball is in your court.  Luckily, you seem willing to extract yourself from this assinine 'argument' in the most face-saving manner possible (i.e., by acknowledging that people do cruel things and justify it in whatever manner they can get away with, be it by appealing to a higher power or a greater goal).  If you do that, you just have a bit of egg on your face for bringing it up in the first place and breaking Godwin's Law.  For a second I was worried you would take the other route, and claim that evolution actually does say what you think Hitler thought it said, and that we evolutionary biologists who claim otherwise are actually part of some clandestine conspiracy or New World Order. Of course, such paranoia would be a bit of a whiff in Hitler ping-pong, now wouldn't it?

But note that the actual theory of evolution is absolutely mute when it comes to higher powers and greater goals, whereas religion is emphatically not. You and I can agree that "a society based on Darwinism" would be a bad thing (if only because I have no idea what that would actually look like -- we might as well argue about a society based on algebra or a society based on gravity). But if you mean "a society based on someone's idea of Darwinism", I shudder just as much as you.  Of course, I do disagree with you about a society purportedly based on Protestant Christianity, as I note that in proclaiming the freedom and tolerance of such a society, you managed to gloss over quite a few warts (e.g., it's been a while since I've met an American so enamoured with the good of British imperialism, and I would have to question your country's "tolerance" of atheism when a recent president mused that atheists might not properly be considered citizens). I'm not saying that I renounce the Christian influence in North America (I am Canadian, and things are a little different here, eh?).  Merely that I simply do not agree that it is the best way of doing things (though I concede it is certainly not the worst).  And it definitely beats a society "based" on Darwinism or gravity, though what that has to do with truth and knowledge in those concepts, I have absolutely no idea.

Date: 2006/05/08 09:00:32, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 08 2006,13:36)

Quote
We are getting off on rabbit trails.  I said I would concede the Hitler point.


"Follow me down the rabbit trail, folks!...Wait, what are you doing here?"

Quote
(a) WE REALLY DON'T KNOW FOR SURE IF HUMANS EVOLVED FROM APE-LIKE ANCESTORS, AND I'M NOT SURE WE EVER WILL.

and ...

(b) WE REALLY DON'T KNOW FOR SURE IF "GODDIDIT" AND WE CERTAINLY CAN'T "PROVE" THAT.


Anybody who has actually read those books you keep being referred to has a big problem with (a), Dave.  We know that humans ARE apes as well as we know all that other stuff that we as a society feel constitutes a basic education.  What God or Dave wants us to know or not know (for our own good, I'm sure) really isn't relevant (see (b)).  But of course you're living evidence that you shouldn't be too worried about students being indoctrinated in actual science. Ignorance is a powerful adversary, as anyone here who has tried to help you learn (just a little!;) about the topic you're spouting off about can certainly attest.

(B), while true, is as relevant to biology classes as it is to math, physics, chemistry, history, and any subject other than religious studies.  And according to the tried and true laws and freedoms of the good ol' US of A (that I assume you once admirably defended, Dave), that is to say: "not at all".

Date: 2006/05/08 09:42:37, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 08 2006,14:06)
Also, this type of thing from Aftershave ...
Quote
Let's use AFDave "logic", shall we?

Those evil Nazis used their knowledge of chemistry to produce high explosives and poisonous gas, so therefore the Atomic Theory of Chemistry must be scientifically wrong!

Worse than that, those evil Nazis used their knowledge of physics and gravity to aim and drop their bombs, so therefore Newtonian physics and the Theory of Gravity must be scientifically wrong!

How can we teach such blasphemy as chemistry and physics to our children???

Let's say someone drops AFDave into the middle of the Pacific with no raft, into a pack of sharks, to see which is "more evolved".  Any bets?


is a sure indicator that this person has nothing left to say that is substantive ...

this does not help the image of evolution promoters ...

the YECs on the other hand thank you for ranting so ...

Could you maybe do some more?  Maybe go tell 4 friends to show up and insult me too ... then you would be 5 times as effective :-)

Ah, for cryin' out loud.  I had just replaced my top-of-the-line irony meter after davescot pulled the same trick earlier this week (i.e., breaking Godwin's Law in prominent fashion before invoking it to chastise all who reply).  This is getting bloody expensive.

Dave, a few simple questions (I have spent considerable effort trying to answer yours):

Can we agree to define science (as it is taught in schools) most simply as "what scientists do, how they do it, and what they uncover about the world around us as they do it"?  You have claimed to be objectively interested in fact and reality, and you seem strong in your faith, so I don't think you should have any trouble recognizing science not as a democracy, but as a meritocracy?

Now, as a YEC, it does not surprise me that you might want to see the Bible taught as the root of understanding that you believe it to be.  But can you get it through the front door of that meritocracy honestly?

The (sometimes unlikely) source of many a good idea has preceded it into science class.  For example, from my organic chemistry classes, I still smile at Kekule's reported "eureka" moment when he supposed deduced the elusive structure of benzene from a dream of a snake eating its own tail.  That's stuck with me, even though I'd be hard-pressed to draw hydrocarbon valences now.  There are pleny of other examples, some apocryphal, some not.  Why do I have no recollection of something along the lines of:

"Beginning from the idea that Jonah spent three days in the belly of the whale, marine biologists at Bob Jones University predicted that the gross morphology of the cetacean digestive system would accomodate the survival of a full-grown human.  Subsequent experiments employing undergraduate volunteers revealed this to be true.  Furthermore, a stastically significant proportion reported feeling thoroughly uncomfortable and "forsaken"."

In your previous thread, you learned how the idea that humans and other great apes shared a common ancestor led to the hypothesis that "missing" chromosome in humans likely indicated a fusion event, and how this hypothesis was later confirmed.  In the foreseeable future, students will be learning how evolution and common descent predicted a reality in microbiology.  Furthermore, if you succeed in your attempts to include "common design" alongside "common descent", they would learn how in this case (and many others), common descent predicted something in much finer detail than could be deduced from the vague concept of common design, and thus emerges as the superior hypothesis.  Same goes for the Vitamin C pseudogene -- "common design" didn't give us anything concrete and substantive to work with, but common descent predicted the presence of a "broken" gene.  At the moment, when I teach undergrads what scientists do, how they do it, and what we've learned, I don't compare the predictions and tests of descent and design. Do you really want me to start?

No doubt my teaching about common ancestry (especially regarding humans and apes) makes you feel uncomfortable, since you deny the starting premise.  So why not put up?  Exactly what do you want me to teach, DAve? What would a "science-minded" YEC like yourself have my students learn about the world that was predicted by the Bible and later born out unequivocally through experimentally tested hypotheses and observations?  Can you give us one example that is as clear and unambiguous as chromosome 2 or Vitamin C pseudogenes or the whole science of phylogeny or...  Can you give me a "snake eating its tail" seed that I can plant in the minds of my students for years to come?

Date: 2006/05/08 10:44:55, Link 128.100.72.100
Author: incorygible
Quote (Mr_Christopher @ May 08 2006,15:41)
Let's not forget that when caged an ape's poop flinging skill seems "more evolved" than a humans as well.

I dunno about that.  Exhibit A is JAD vs. DaveScot on Larry's blog.  Put them in an actual cage (as opposed to their metaphoric mental ones), take away their keyboards...I know where I'm putting my money.  I've watched apes: they get bored of poop flinging after a while.

Date: 2006/05/12 07:13:31, Link 128.100.72.100
Author: incorygible
Oh, I get it.  It was my mistaken impression that I passed an accident on the highway this morning.  Since I only saw a rim and no tire, it was my mistaken hypothesis that the van's front left tire had blown, rendering the vehicle inoperable.  It is now apparent to me that: (1) it was never a van, but was always a heavily modified, only-non-functioning-to-the-untrained-eye tricycle; (2) the empty rim was just for decoration or for some other purpose that we can't possibly know, given how little we know about motor vehicles; and (3) the driver hadn't lost control and veered wildly into the guardrail, but had instead parked that way for a similarly unknowable purpose.  Gotcha.

Date: 2006/05/12 07:26:48, Link 128.100.72.100
Author: incorygible
Quote (stevestory @ May 12 2006,12:16)
I mean gosh incorygible, that was such a HUGE unfounded assumption. I hope you've learned your lesson. It's equally likely the whole scene with the van was arranged ex nihilo by a magical being for inscrutable reasons. You're so stupid.

I know, I know.  However, in my defense, I *did* allow the outside possibility for exactly that.  Maybe some benevolent aerial muse wanted to give me fodder for analogy today.  (####!  Now I'm really dumb!  I just broke the first rule of ID Club and tried to contemplate the motives and properties of an unknowable designer!;)  It was also  *conceivable* that the scene had been designed by a known intelligent agency, perhaps to film a movie or destract authorities from a heist or...  But in my silly scientific fashion, I observed all I could and applied parsimony in the analysis.  Whoops.

Date: 2006/05/15 07:48:52, Link 128.100.72.100
Author: incorygible
Alright, Dave, you turn up your nose at my "brokedown van" analogy and give us houses instead.  I'm game.

So we're strolling down the winding, branching streets of our city, each of which is lined with millions of homes, but  eventually lead to cul-de-sacs where the newest homes are.  (This is strange, but hey, maybe the area is still being developed, eh?)  All of the houses look very similar (let's go with your 97%) to other houses on the block, but very different to other streets, neighbourhoods (?and cities?).  Now we're in one neighbourhood where every front door is four feet off the ground, and every house has a porch with stairs leading up to it.  The stairs vary little -- they're all made of concrete with some slight differences in tiling, and the laticework on the railings has some variance.  But functionally, they all consist of six 8-inch concrete stairs, bordered by railings, leading from walkway to porch.  Now we come to one of the many cul-de-sacs in this neighbourhood.  With our unbiased expertise (it's purely a coincidence that we live here!;), we KNOW that this is THE BEST neighbourhood in the city -- the top of the top when it comes to real estate.  Lo and behold, on every house here, there are walkways, porches, and even railings -- but no stairs!  Almost every other house in this neighbourhood has stairs (the lone exception of which we are aware being one other group of houses on a sidestreet about 70 blocks back).  One is left to wonder how the residents in these wonderful, top-of-the-line mansions get to their front door.  (The answer seems to be that they borrow stepladders from the yards of other houses, and get by well enough doing this, though once in a while they run into ugly problems when they really need up to that porch and there is no ladder to be found.)

What do you conclude about your house designer now?

Date: 2006/05/15 08:10:32, Link 128.100.72.100
Author: incorygible
Quote (ericmurphy @ May 14 2006,17:46)
[quote=thordaddy,May 14 2006,07:39]

And besides, you're under the entirely mistaken impression that genes function at the individual level. They don't. The function at the population level.

Think about it for a moment, Thordaddy. Imagine a population that has outgrown its supply of resources (food, water, etc.). Can you imagine that there could be a selective advantage to the population as a whole for certain members of that population to be non-breeding?

And besides, if you don't think homosexuality has a genetic basis, then how do you explain the existence of homosexuality in animal populations? Bonobos, unquestionably the most closely related organisms to humans, have a well-documented history of homosexuality in many individuals.

Er...I can't say I agree with this line of reasoning.  Genes most certainly DO function at the level of the individual organism.  Whether (and how) genes function at higher levels of organization is still a matter of considerable debate, and even staunch group selectionists would admit the individual effect is the stronger of the two.  IMHO, your "selective advantage" of human populations who carry non-breeders for times of limited resources is getting a little too close to "good of the species", and would be easily exploited by "cheating" breeders.

I'd say you're much better off arguing the social benefits (a la the Bonobos), or the arguments from inclusive fitness (a la Hamilton and recent studies that show improved fertility in sisters of gay males), or the maternal effect (wasn't there a recent study showing the influence of hormonal gender biasing in the womb after the first child, and potential influence on sexuality?), or...

Date: 2006/05/15 10:37:02, Link 128.100.72.100
Author: incorygible
Quote (ericmurphy @ May 15 2006,15:09)
But at any rate, the fact that organisms other than humans occasionally manifest homosexual behavior pretty much puts the final nail in the coffin on Thordaddy's absurd claim that homosexuality is some sort of "lifestyle choice," and that it is somehow "against the natural order of things."

To be sure.  Of course, we're just about due for a reminder that it really doesn't matter how many coffins or how many nails there are when there's no body to bury -- just the endless wailing and rending...

Date: 2006/05/15 11:24:05, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 15 2006,16:09)
If this is not the case, then he does not have an argument, in my opinion.

*bangs head against wall*

And here we see the...ahem...fundamental problem.  There is black and white, same and different, and nothing else.  Degree and nature of similarity and difference are apparently far too subtle concepts for afdave to wrap his head around.  We saw this earlier...if humans and guinea pigs both had broken GLO genes, then, why, that must mean they were related, right?  If humans share about 97% of their DNA with chimps, then we should expect that any given stretch of DNA will be 97% similar. If the GLO genes of humans and other primates are not 100% identical, well, then there's no argument for common descent.  Dave really can't see how lame and erroneous these "deductions" are.  There is only ally and enemy, yes sir and no sir.  But when asked what he thinks of AIG's revealed misinformation, suddenly there is a complex gradient of lies, mistakes, reasons, etc. ...

*sigh*

Date: 2006/05/15 14:21:51, Link 24.42.173.36
Author: incorygible
You inhuman, ungodly deviant!

Date: 2006/05/15 14:31:31, Link 24.42.173.36
Author: incorygible
Quote (sir_toejam @ May 15 2006,19:27)
comes from studying marine biology.

all us fishy types are deviants.

Preaching to the choir.  Salmon biologist here, not to mention a bit of a "precocious parr" in my youth...

Date: 2006/05/15 14:46:01, Link 24.42.173.36
Author: incorygible
Quote (sir_toejam @ May 15 2006,19:35)
salmonids, eh?

population biology?

Ever heard of Jennifer Nielson?

Ayuh.  I do demographic modeling now, but my original PhD proposal was for population genetics and phylogeography of Pacific salmon introduced to the Great Lakes, so I'm very familiar with her work.  Friend of yours?

Date: 2006/05/16 05:32:48, Link 128.100.72.100
Author: incorygible
Hold on a sec, Dave.  You AGREE that the inability to synthesize Vitamin C is the result of a mutation in the GULO gene?!  You don't think the Designer designed the gene this way on purpose?  So you've abandoned the "unknown function" argument, but are keeping it around as a backup?  Good plan.  Sure, you see this mutation as the result of a fallen world, but you're halfway there, man!  Now, the only thing left is this: do you believe this mutation occurred by random change/damage to the DNA, or was it a deliberate curse on primates inflicted by your God?

Because, as we have been trying to point out to you, Dave, it's not THAT the GULO gene is broken -- it's HOW the gene is broken.

I gave you houses because you gave us houses (similar houses = common designer, remember), and you chastise me for a bad analogy.  Fine.  Let's talk about the situation in as simple and as accurate terms as possible.

The sequence evidence we have STRONGLY suggests that the original "break" in the GULO gene (a deletion, I believe) was by the exact same mechanism, in the exact same place, for all primates.  (Meanwhile, the "break" for guinea pigs was in a different place -- I'm not sure whether it was the same type of mutation.)  After it was broken, this region mutated more freely, and accumulated the errors that give it the slight differences among primates (the 5%, for example).

This is a basic element of evolution (mutation and selection).  As you seem to know, mutations happen (mostly) randomly all the time.  Sometimes they are completely neutral (e.g., a single base-pair substitution which results in a codon that specifies the exact same amino acid).  Sometimes they are generally neutral (e.g., a different amino acid results, but that amino acid is not vitally necessary to the structure and efficacy of the resulting protein, and you can hardly tell the difference).  Sometimes mutations result in reduced activity of the protein, but it remains somewhat functional.  Finally, severe mutations (frameshifts, deletions, substitutions resulting in stop codons, etc.) can destroy the function of the gene product.  This is the "break" we are speaking of when it comes to GULO.  When that happens, it is a question of whether or not the organism can "get by" without the product (which in this case means getting by without Vitamin C).  So if the break happened in an animal that didn't have sufficient Vitamin C in its diet, and now could no longer synthesize it, then there would be selection (possibly very strong selection) against the "broken" gene, and we would be less likely to find it in the population at a later time.  However, if the animal could make do, then the broken gene would be carried along.  Since it no longer does much of anything, further mutations could accumulate in that region at a faster rate (since selection would no longer be operating to maintain the gene's function).

Now, again, there are all manner of mutations by which a particular gene could break, and it could do so at any point on the DNA.  Selection makes these severe mutations in an important gene relatively rare, since the animal will have to compensate for the loss of function.  We look at primates and see the same type of break in the same place on the GULO gene.  If you agree that the original break happened randomly, via mutation, why do you think it happened on multiple occasions but in identical fashion in all primates?  What made these damaging mutations occur the same way and in the same place in primates (when they could have happened any number of ways), but a different way in guinea pigs?  This is where common descent emerges as a superior, more parsimonious explanation than common design (even when followed by "sin" and random mutation).  Unless you want to evoke your designer for breaking the gene?

You and AiG gloss over the nature of the breaks, and the nature of the remaining similarities and differences in this region of DNA, in favour of "broken" vs. "unbroken".  AiG most certainly (despite you granting them the benefit of the doubt) uses the simple trait of "broken" (hardly a good character) to imply that evolutionists should therefore conclude that humans and guinea pigs are more related than guinea pigs and rats.  (By the way, it's actually pretty close -- according to Dawkins's book, rodents separated from the human lineage about 75 million years ago, and guinea pigs separated from the rest of the rodents about 70 million years ago.)

So over to you, Dave.  If your common design scenario is to be equally valid, how does it explain "breaks" in the GULO gene that were, as best as we can tell, the same type and place of break for all primates.  How does common design suggest that these breaks occurred multiple times independently? (Maybe you should apply the same kind of probabilistic reasoning you use to doubt evolution to this question?)  Common descent has a simple answer: it happened once for primates (and once for guinea pigs), and we've inherited the remnants.

Date: 2006/05/16 06:58:30, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 16 2006,10:58)
Shared ancestry predicts shared errors ... no problem.  I agree.  But Creationism predicts the same thing, namely, the Creator made apes and humans as separate kinds with functional GULO, then both might lose function through mutational degeneration.  Big deal.  This is what creationists expect.  I would expect other species to lose the function in years to come also.  What do we find in apes and humans?  Voila!  95% similar broken GULO!  No surprise there.  Even if it is the same substitution (or deletion or whatever) in apes and humans, so what?  Humans and Guinea Pigs have 36%  (High percentage to use Inai's words) identical substitutions.  Why shouldn't apes and humans also have an even higher % of identical substitutions?

Dr. Max does not even say the error itself is identical.  He just says both apes and humans have broken GLO.  But even if there were some "identicalness" this proves nothing for evolutionists.

Dave, ONCE AGAIN: 'shared errors' is not the same as 'also contains errors'.

So I tell you what:

You stipulate that humans, apes and monkeys have the exact same 'shared error' that broke GULO.  (You've already done as much with, "Big deal.")

In return, I'll hold my nose (something sure smells fishy) to go a huge step further in stipulating that guinea pigs have a very similar error.  In other words, we'll accept, for the sake of argument, AiG's little song-and-dance contention that 36% shared 'lesions' indicates such a similarity.  (Nevermind for the moment that others have pointed out that they conveniently ignored deletions, etc. to arrive at this figure, or the fact that 36% similarity is hardly a high index -- I'll stop calling them liars for a bit.)

So riddle me this...

We have about a thousand original kinds.  (Again, others have contested this estimate as too few to have seeded the earth without some SERIOUS evolution going on, but I'll go with it.)  Guinea pigs are part of one original kind (rodent-kind, rat-like-kind, small-furry-child-pet-kind, whatever).  Humans are most definitely their own kind.  Apes are a third.  Monkeys may be a fourth (I'll include the monkey-kind you mention, but you can omit it when you tap-dance, if you wish).  These kinds were created independently, but after the fall, random mutations resulted in broken genes like GULO.

Can you please tell me, why (oh why?!;), when we look at broken GULO, 3 of the 4 kinds that share the break (out of a thousand or more) are exactly what common descent would predict?  Furthermore, whenever we look at a broken gene like GULO, if it's broken in our kind, it's very likely to be broken in the ape kind, a little less likely (but still quite likely) to be broken in the monkey kind, not nearly as likely to be broken in the cat kind or the dog kind (but sometimes), and either not broken, or completely different, or not there at all in amphibian kinds and insect kinds and...  Why do we see this, Dave?  Even if we spot you the guinea pig GULO, and similar exceptions, we still see this pattern emerge so obviously you'd have to be blind not to see it, and you really need a predictive theory to explain it (i.e., something far better than "shit happened after the Fall", Dave).  Common design might predict the working genes being similar in similar appearing species, but by your own admission, it has nothing to do with the broken ones -- creationists don't believe they were designed that way, right?  

Do you really fall for "arguments" like the following from the AiG GULO screed:

Quote
"If a strong pattern of pseudogenic ‘shared mistakes’ can happen even once in an evolutionarily impossible manner, it can also happen again and again in an evolutionarily consistent manner. Now, more than ever, Occam’s razor dictates that ‘shared mistakes’ be approached in terms of parallel mutations rather than common evolutionary ancestry."


Do you not see that first sentence as a huge non sequitur?  Could we not just as well say, since we know of many exceptions where people have fallen from great heights unharmed, that we may as well start walking out of windows because all bets are off?  Or would you rather apply a little probabilistic reasoning in that case?  At this point, suit yourself.

Furthermore, speaking of probability, if you accept the AIG argument, you must agree with this:

Quote
Of course, it is virtually inconceivable that these many identical nucleotide substitutions have arisen solely by chance:

   ‘Assuming an equal chance of substitution throughout the sequences, the probability of the same substitutions in both humans and guinea pigs occurring at the observed number of positions and more was calculated to be 1.84 X 10-12. This extremely small probability indicates the presence of many mutational hot spots in the sequences.’35

It has long been known that mutations are quite non-random in occurrence, but the variety and complexity of mutational hotspots has seldom been appreciated. Rogozin et al.36 have recently summarized our current knowledge of experimentally induced mutations. Many nucleotide motifs other than the earlier-discussed CG doublet can serve as mutational hotspots. It is now known that the sequence content tens of bases away from a given motif can influence the degree of its hotspot behaviour. Moreover, the propensity of nucleotide motifs to be mutational hotspots varies from gene to gene and from one region of the genome to another. Moreover, the foregoing considerations do not even touch the higher-level features of gene or chromatin structure as causes of mutational hotspot behaviour.37 The large relative number of parallel mutations in the guinea pig and primate GULO pseudogenes cannot be said to be unprecedented. Experimental evidence has already demonstrated that nucleotide substitutions (as well as indels, for that matter) can, unexpectedly, occur in a very strongly concerted manner.38


So, given these non-random 'hot spots' and other biochemical phenomena that we are just beginning to understand, I'm sure you would never say anything about mutation being entirely random when it came to the evolution of life, right?  And you'd certainly never accept an argument against the probability of a genetic sequence that assumed such simplistic, purely random mutation, right?

Like this one:

http://www.answersingenesis.org/creation/v1/i1/figures.asp

or this one:

http://www.answersingenesis.org/creation/v17/i2/chance.asp

or this one:

http://www.answersingenesis.org/home/area/re2/chapter9.asp

or all the similar ones listed here:

http://www.answersingenesis.org/home/area/faq/probabilities.asp

You and your sources would remain consistent, right?

Date: 2006/05/16 07:19:35, Link 128.100.72.100
Author: incorygible
Dave, in case you can't be bothered to read the longer post above, I'd like to ask the most important question, point-blank, so you don't miss it:

You say "common design" explains the nested genetic hierarchies we observe "just as well" as common descent.  While this assertion may be at least arguable for functioning genes (hint: try more arguing, less asserting), you have stated that the "design" had nothing to do with post-Fall mutations and errors (i.e., they weren't "designed that way", and no creationist argues that they were*).  So why do obvious genetic mistakes also show nested hierarchies, beyond those you might expect from initial "kinds", with only a handful of exceptions**?  Furthermore, why are these two sets of nested hierarchies (one deduced through "design", and one through whatever mechanism you have for post-Fall errors) identical?  How does your "theory" predict this?

*It could be just me, but I'm pretty sure that earlier in the thread (i.e., before you shifted gears) you argued that they WERE designed that way for an unknown function.  Is my memory faulty, Dave?

**Exceptions which are beginning to be explained by our understanding of hot-spots, etc., but are far too few to overshadow the obvious pattern of descent.

Date: 2006/05/16 11:38:47, Link 128.100.72.100
Author: incorygible
Quote (jeannot @ May 16 2006,16:14)
But.... what are we doing here my friends?

Dave is a YEC, a young Earth creationist. How can we convince a YEC with scientific facts?
13 pages of arguments to nothing. Do we really need to continue?

Agreed.  But then, tomorrow morning we'll get another drive-by daving.  And again, when the scattered shot of a barrel sawed off way too short by fundamentalist dogma backfires in a spray of ignorance, we'll scavenge the emptied casings and try to show him exactly what is wrong with his ammunition.  But jeannot is right -- his barrel will always be too short, his aim will always be off, and what few shots he gets away that manage to avoid his own face will always be woefully impotent.  Nevertheless, every morning he'll be here, squealing 'round the corner and enthusiastically pulling the trigger.

Date: 2006/05/16 11:51:58, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 16 2006,16:39)
No.  Your memory is not faulty.  I think the 2 scenarios I mentioned early today are possibilities.  You have not given me enough information to decide which one is correct.

Er...with your open and honest inquisitiveness, I presume NEITHER still has an outside shot, right Dave?  Seeing as how it's the most parsimonious third explanation employed by tens of thousands of scientists who don't have to beg for spoonfed information that they can't digest?  When did "neither" fall off the table, Dave?

So GULO WAS designed that way?

Or it WAS designed that way until we provide you with genetic data (that you couldn't begin to interperet) for every species in the animal kingdom to demonstrate that the pseudo-GULO gene, whatever it produces at this point, does nothing more than make Vitamin C synthesis impossible?

At which point, it WAS NOT designed that way.  No creationist ever said it was.  Look, here's the AiG article which clearly states it is a broken gene.  How could it be otherwise?  

But big deal -- it became that way after the Fall, where it has mutated at a fantastic rate over the past six thousand years.  By chance, those independent mutations beautifully imitate the patterns of common descent predicted by evolution, even though, in this case, the Designer didn't do it -- non-random mutation did.  But look over here -- I have a guinea pig in my pocket...

This is what happens when you believe six impossible things before breakfast.

Date: 2006/05/16 12:08:05, Link 128.100.72.100
Author: incorygible
Okay, Dave, let's go traipsing through the animal kingdom...

Krasnov et al. (1998.) Expression of rat gene for L-gulono-gamma-lactone oxidase, the key enzyme of L-ascorbic acid biosynthesis, in guinea pig cells and in teleost fish rainbow trout (Oncorhynchus mykiss). BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS 1381 (2): 241-248.

Abstract: The ability of rainbow trout liver and kidney preparations to produce L-ascorbic acid with an added source of L-gulono-gamma-lactone oxidase (GLO) and the absence of their own GLO activity suggested that the reason for the absence of L-ascorbic acid biosynthesis in fish and in guinea pig, a scurvy-prone mammal, can be similar. Nevertheless, results of rat GLO cDNA expression in guinea pig cells and in rainbow trout proved different. In guinea pig cells, rat GLO was expressed in a functional form. Regardless of recombinant GLO transcripts detected in rainbow trout embryos, alevins and in juvenile fish, neither GLO protein nor GLO activity were found. Furthermore, production of L-ascorbic acid in transgenic rainbow trout was not revealed in feeding tests with vitamin C-free diets or after direct administration of L-gulono-gamma-lactone. These results indicate that conditions required for translation or stability of rat GLO are absent in rainbow trout tissues.

Translation:

Neither trout nor guinea pigs can make Vitamin C on their own, but put the GLO protein in their diet and away they go.  This leads to the hypothesis that maybe trout and guinea pigs can't make Vitamin C for the same reason (i.e., the broken GULO).  So we put the GULO gene from a rat in both trout and guinea pig cells.  Guinea pig cells start making Vitamin C.  Fish don't.

Why did your designer do this, Dave?  Whatever this GULO thing is, it sure seems to be important for making Vitamin C in mammals, but not in fish.  Weird, eh?

Date: 2006/05/16 12:14:53, Link 128.100.72.100
Author: incorygible
Back to humans for a second, and we even have a pretty good idea how the GULO gene got broken.  Not only that, but since free radicals are mutagens, and since Vitamin C scavenges free radicals, this little case study of ours might have accelerated primate evolution in general.


Challam, J., and T. Will. 1998. Retroviruses, Ascorbate, and Mutations, in the Evolution of Homo sapiens.  FREE RADICAL BIOLOGY AND MEDICINE 25 (1): 130-132.

Abstract: Mutations, induced by free radicals, provide a rich molecular palette that other evolutionary forces can select for or against. A recent hypothesis proposed that large numbers of free radicals were produced when, millions of years ago, Anthropoidea lost the ability to produce endogenous ascorbate, increasing the frequency of mutations and accelerating the evolution of higher primates. Recognizing that retroviruses have been active throughout the period of primate evolution, we suggest that an endogenous retrovirus or other retroviral-like element may have been involved in mutating the gene coding for gulonolactone oxidase (GLO), the terminal step in ascorbate synthesis, approximately 45 million years ago. This possibility is supported by the presence of Aln elements (a common primate retroelement) adjacent to the site of a missing segment of the nonfunctional GLO gene. Although Homo sapiens and other higher primates produce other endogenous antioxidants, including superoxide dismutase and uric acid, they do not quench the same radicals as ascorbate and cannot fully compensate for a lack of endogenous ascorbate, As a consequence, a retrovirus may have played a pivotal role in primate and H. sapiens evolution, and the absence of endogenous ascorbate may be continuing to accelerate the rate of H. sapiens and primate evolution.

I'm sure you're finding this as fascinating as I am, Dave.

Date: 2006/05/16 12:27:37, Link 128.100.72.100
Author: incorygible
Dave, I'm going to reproduce a schematic (using roman numerals to identify regions of the gene) from Ha et al. (2004) showing human and guinea pig GULO, relative to the functional version in rats.  Look at them carefully.  Do you get what we're saying yet?

Rat: |I|II|III|IV|V|VI|VII|VIII|IX|X|XI|XII|

Human:                                |VIII|IX|X|   |XII|

Guinea Pig:   |II|III|IV|   |VI|VII|VIII|IX|X|XI|XII|

Date: 2006/05/16 17:42:57, Link 24.42.173.36
Author: incorygible
Dave, at the beginning of this thread you mentioned how we supposedly don't know anything about the genetic "language" involved in GULO and vitamin C synthesis.  Based on this ignorance (since shown to be yours alone), you whined that your creationist assertions were just as good.

Since then, you have been shown what we know. You have been shown how common descent predicts a shared pseudogene between humans and other primates.  Not only does your "theory" not predict this, but you have to do a lot of dancing to make it even accomodate this strange similarity across different "kinds". What do you know, Dave?

If a new species of primate were discovered tomorrow, how does your "theory" inform us?  What predictions does it make?  Do you have to know if it is in the monkey-kind or ape-kind first?  Shouldn't that be important informantion in developing your predictions?  Might you not want to nail that down?

Mine says that this primate, if deprived of vitamin C in its diet, will develop scurvy.  Yours (is it independent mutations sometime after the Fall? is it special but unknown independent function of the GULO?) has no reason to predict this.

Mine says that its inability to synthesize vitamin C would be a result of it being unable to produce active GLO protein (which is just one of MANY proteins involved in ascorbate synthesis, and thus one of many places where things could "break").  Yours has no reason to predict this.

Mine says that the mutations in this GULO gene would be in specific regions, in a specific appearance common to primates.  These differ in recognizable ways and degree from the mutations in guinea pigs.  Yours cannot predict this.

Mine says that you will not find a functional GULO region in this primate.  Yours has no reason to predict this.  Note that despite argystoke's interesting proposed experiment, we have no reason to expect the converse.  That is, we might well expect to find additional broken GULO regions in rats and other animals that still have functioning GULO and can synthesize vitamin C.  This would indicate duplication (similar to that found in hemoglobin genes and many others).  It would not indicate some vital and as-yet unknown function of the pseudo-GULO.  So, while it's an interesting idea, it wouldn't provide any magic bullet to decide between your "scenarios".  I notice that you didn't have enough understanding of the question to realize this.

Mine says that if we spliced a rat or mouse GULO gene into the primate's liver cells (as we have done for humans), it would be able to synthesize vitamin C.  Yours has no reason to predict this.  Mine says we couldn't do the same for a fish.  Yours?

Mine says that this pseudogene is likely the result of a retrovirus, and that the mutation occurred about 40 million years ago, in the shared ancestors of that primate and us.  Yours?

What does your "theory" predict for our newfound primate, Dave?

Or let's leave the hypothetical primate.  Let's look at a hamster, Dave.  What does your "theory" predict for hamster GULO?  Is a hamster part of the guinea pig kind?  The rat kind?  Its own kind?  Does it matter?  Can you -- without peeking at those hocus-pocus evolutionary phylogenies tracing ancestry -- predict anything about hamster GULO and vitamin C production?  Can you test your predictions on your own?

Who doesn't know the language here, Dave?

Date: 2006/05/17 05:43:09, Link 128.100.72.100
Author: incorygible
Quote
(1)  One reason I am here at PT is to see if there really is anything substantive to evolutionary arguments.  Seems like a good place to find out would be a forum where evolutionary scientists hang out.


Yes, Dave, it is.  Here, you have access to dozens of evolutionary biologists, other scientists, and educated sorts who are masochistically willing to donate their time to answering your questions.  You know, normally I get paid very well to share my understanding of biology with a room full of 30 students who have paid thousands of dollars to sit in.  Glad you appreciate the effort.

Quote
(2)  Notice that on this thread, it is not my primary goal to prove to you something positive about the Creationist view of Apes and Humans.  It is to see if YOU have some positive, convincing proof that would make me rethink my position that Apes and Humans are separately created kinds.


You're an arrogant SOB, you know that, Dave?  From whence this audacity to dictate OUR roles in educating YOU in the absolute absence of any effort on your part?  See above.

Quote
(3)  Someone has pointed out that I just want everyone else to run around chasing data and I myself don't want to do any "real scientific work."  Well, in this case, YES.  The burden is upon you to try to convince me.  I have always felt sorry for evolutionists in a way, because I have always thought it would be a huge undertaking to try to defend many aspects of it, and so many arguments have crashed and burned in the past when new information is known.  I'm finding this to be true with Ape/Human issues in general and with the GULO issue in particular.  Sorry if this observation frustrates you, but it's an honest observation.


It is a "huge undertaking" to understand volume upon volume, journal upon journal, paper upon paper of published, peer-reviewed science, Dave.  Takes decades of full-time devotion.  In light of that, your observation, your opinion of "burdens", and the roles you have set out are anything but "honest".

Quote
(4)  Someone has correctly observed that I am an apologist for YEC.  I'm glad someone has figured this out because it is true.  I have said many times that I don't want to become a specialized scientist in a particular field--we have many of those already.  But I am being honest when I say that I would abandon the YEC position if given some convincing evidence for NOT being a YEC.  It's just that no one has yet.


So you recognize the huge undertaking to become knowledgeable in this subject, but think you can have it for free.  I would have suspected you'd have come across the term "no free lunch" in your IDiot meanderings, Dave.  In this case, however, it actually applies.

Quote
1)  You assume that the ONLY reason human and ape GULO does not work is because of this single deletion.  Am I correct?


No.  You are looking at one small region of the gene.  The deletion may have broken the gene.  It may not have.  Other mutations could have occurred before, and others since.  We've shown you the exact nature of the mutations that we see now.  We've pointed you in the direction of references where you can find out more.

Quote
2)  You are assuming that pseudo-GULO is in fact "broken GULO".  Argystokes has not yet demonstrated that to me.  To me it is a possibility that "pseudo-GULO" has some as yet undiscovered function.  Remember the good old "vestigial" organs that turned out to have function after all?  Why wouldn't "vestigial" GULO turn out the same way?


You just don't get it.  Read the thread, Dave.  Functioning GULO produces a known active protein that is vital to endognenous vitamin C production.  That is the product of this gene.  We understand how this biochemical pathway works very well, Dave.  When mammals can't synthesize vitamin C, it tends to be because this gene is broken and the protein (required for one of the last steps in manufacturing vitamin C) is not made.  Fish, on the other hand, are missing more than just GULO (as shown in that study I pointed out).  It doesn't have to be this way, but it is, and why this is so is explained nicely by the phylogenies we have already developed.  Furthermore, pseudo-GULO may have some other function.  Doesn't look like it at the moment.  Maybe it creates a fantastic new protein for humans and monkeys and guinea pigs to exploit.  Maybe it helps in the structure of DNA.  Doubtful at this point (hence the whole "pseudogene" label), but maybe.  This doesn't change anything at all.
Quote
3)  You are assuming that this "deletion" is in fact a deletion.  The word deletion implies that it was there at one time in history and now is not due to a mutation.  I think you base your idea that it is a deletion by comparing it to rat GULO.  A tempting comparison and I do see your logic, but how is this conclusive?  An interesting experiment in this regard would be to delete the "C" in question in the rat GULO, then see if rat Vitamin C production ceases.  Has this been done?  Is it even possible?  How about inserting a "C" into some ape GULO, then seeing if Vitamin C production commences?  I did read the Rat/GP/Trout experiment and it is interesting, but does this prove that the "C deletion" is definitely the cause of non-functionality?


Yes, Dave, it's all been done.  We can easily knock out vitamin C production by breaking rat GULO in any way you desire.  No functioning gene -> no functioning protein -> no vitamin C synthesis.  This is basic.  Look at the medical literature.  That Ha et al. (2004) paper I referenced earlier is titled "Functional rescue of vitamin C synthesis deficiency in human cells using adenoviral-based expression of murine L-gulono-gamma-lactone oxidase" (Genomics 83:483-492).  They took murine (rat/mouse) GULO, spliced it into human liver cells via a virus (we do this all the time, Dave), and those cells began synthesizing Vitamin C.  I've already told you this.

Quote
(4)  You assume that this "C deletion" occurring independently in apes and humans is a highly unlikely event.  Why is it so unlikely?  After all, there are many identical substitutions in an unrelated ... er ... *cough* ... distantly related (yes, yes, I forgot my head yesterday for a moment ... it is still a challenge for me to remember that you all think ALL organisms are related through common ancestry), i.e. our furry friend, the guinea pig.


We've been over this.  The information is right in front of you.  Base-pair substitutions have, at worst, a 25% chance of being identical.  Add in hotspots and other factors and this increases (maybe reaching, horror of horrors, 36%).  Deletions are not substitutions, Dave.  Substitutions are much more common in (surviving) organisms.  Base pair substitutions (expecially in the third position) tend to be the least "damaging" mutations, not strongly selected against.   A substituted base pair can easily be substituted again and again.  Stretches of DNA that get deleted do not reappear.  They easily break gene functions.  They are rarer.  Why is it unlikely?  It should be clear by now why shared deletions (deleted stretches of DNA that rarely occur, often kill, and could have occurred anywhere, but happen in the same place) very strongly suggests something to us, Dave.  Close your eyes and cover your ears.

Quote
"Also, as a side note, does Creationism make any predictions as to the number of "kinds" there are out there? Or does Creationism even have an estimate of the number of "kinds"? Because evolution does. It has a nice little diagram of the organizational structure of life on earth. Does Creationism have its own diagram, or does it just plagiarize the one created by real scientists?"

I think they do somewhere.  I can find out pretty easily from AIG or ICR or someplace.


No, Dave, they don't.  Prove me wrong.

Quote
I just threw out that 1000 number.  I have no idea what a good number might be.  The actual number was not important to my argument yesterday, so I just picked one out of the air.


Glad you hold yourself to the same evidentiary standards to which you hold us.

Quote
Yes.  The magic potion of evolution ... millions and billions of years.  I hate to be so unkind as to tell you that you might need to pay attention, but if you read this thread, millions of years doesn't have anything to do with the questions I have raised on this thread.


It most certainly does.  Timescales are inherent in what we predict about the shared/divergent evolution of primates, guinea pigs, and everything else.  Your ignorance is showing again, Dave.

Quote
You are the biology expert.  I am the apologist.  Remember the role discussion above?  By the way, I am very impressed with some of the technical knowledge displayed here.  I don't want to trivialize that.  I am just pointing out some items which appear to be logical fallacies to me.


"It is not my job to match your pathetic level of detail," screeches yet another IDiot.  Sorry, Dave -- NO FREE LUNCH.  In whatever roles you have dictated to us, you have (VERY erroneously) put yourself in the position of someone capable of understanding biology to the point of evaluating evidence and determining what is convincing.  As an apologist, you have advanced the assertion that your "theories" are just as good.  You have gone into great deal in your apologetics, and have certainly invited a relative comparison of the knowledge to be gleaned from these competing ideas.  If your "theory" can't say anything definitive about the hamster, or apes and monkeys, or anything else (apart from being saved by Jesus), that's really too bad, Dave.

Dave, you don't have to tell us what our respective roles are.  You have demonstrated that you are arrogant, ignorant, unreasonable, lazy and intellectually dishonest.  The posters who have replied to you have shown patience (for the most part), knowledge (and a desire to share it), reason, effort and honesty.  We've seriously considered your ideas about God and creation and ETs (though most of us have already considered similar arguments long before).  We've read your articles, and even attempted to answer questions that YOU should be answering (like where exactly the author at AiG went wrong, what creation "theory" might predict about life on this planet, etc.).  We served you free lunch after free lunch, even as you puked on the carpet over and over and over...  Our respective roles as apologist and scientists are readily apparent.

See ya 'round, Dave.  And please, at some point, pick up a bloody book, learn a little bit about the things you claim to have a capability to evaluate, and really think about the things others tell you and the questions they ask of you.  It never hurt anybody.

Date: 2006/05/17 07:02:12, Link 128.100.72.100
Author: incorygible
Quote (Henry J @ May 17 2006,11:41)
Re "Fish, on the other hand, are missing more than just GULO (as shown in that study I pointed out). "

Is that all fish, or just some of them?

Henry

Good question.  Only stuff I've seen on ascorbate in fish pertains to transgenic salmon, and suggests that an inability to synthesize vitamin C endogenously is common to all teleost fish (their dietary requirements are also far lower than mammals, and deficiency is not as severe).  Non-dietary GLO has, however, been found in lower fish.  Looking into it a little further, it appears that there is a bit of controversy as to whether any teleosts can synthesize vitamin C, and one interesting study suggests mullet may be able to biosynthesize GLO seasonally.  The Krasnov et al. (1998) paper began with the hypothesis that GLO is the only thing missing in vitamin C synthesis (since biochemical precursors to GLO are present in tissues).  However, they concluded that:

Quote
Probably, the conditions required for the efficient translation, posttranslational modification and compartmentalization of GLO, which have been conserved in guinea pigs after loss of their own gene, are absent from rainbow trout cells. However, considering the long evolutionary distance between mammals and fish, it is possible that transfer of a GLO gene from lower fish could be more probable for correction of L-ascorbic acid biosynthesis.


(Hey, Dave, did you catch that useful, practical evolutionary prediction at the end there?)

Date: 2006/05/17 09:35:18, Link 128.100.72.100
Author: incorygible
I dunno.  I think it'd be pretty funny to see Mark Perakh provide this.  Dembski would be duty-bound to pay up (funds donated to NCSE?) and cite Perakh for solving it in his book.  Then he pretty much wouldn't have a pot to piss in (okay, in a more obvious sense than usual) when Perakh rips him to pieces for however lamely he is about to apply this equation that someone else (the critical reviewer, no less) solved for him.  Now THAT would be entertaining street theatre!

Date: 2006/05/17 10:29:38, Link 128.100.72.100
Author: incorygible
Quote (jeannot @ May 17 2006,14:50)
The problem with Dave, is that he has to answer lots of objections and questions from several posters. Since he obviously can't answer all, and I won't blame him for that, he can freely choose which point he wants to address (sic), leaving the remaining, most relevant points unanswered.
So there can't be any real debate.

True.  When it comes to his responses, we can't blame him for a small sample size relative to the population.  We CAN however blame him for poor sampling method, poor data collection from that sample, poor analysis of that data, poor inferrences from those analyses, and poor publication of the results...

And that's to say nothing of his rather flawed "experimental design", poor initial hypotheses, poor bakground research...

Date: 2006/05/17 13:58:04, Link 128.100.72.100
Author: incorygible
Quote (Henry J @ May 17 2006,16:35)
I had another thought on my question. Since tetrapods are (cladistically speaking) an offshoot of one type of fish, it likely couldn't be all fish that had this gene broken (else no tetrapod would make its own vitamin C). So I predict that the fish that are the closest relatives to tetrapods will most likely have the gene intact.

Henry

P.S. I see from http://tolweb.org/Gnathostomata/14843 that teleosts are a separate branch from the group that includes tetrapods.

I'm really not sure.  An early Science article by Chaterjee (1973) has a pretty tree and suggests that the ability to biosynthesize ascorbate originally arose in the amphibians (since the ability, at that time, appeared to be lacking in fish, insects and invertebrates).  Amphibians and reptiles make GLO in their kidneys, whereas mammals and "higher order" birds synthesize it in the liver.  I suspect the current reality is a little fuzzier than Chaterjee's tree, and your hypothesis is an interesting one.

Date: 2006/05/17 14:05:32, Link 128.100.72.100
Author: incorygible
Quote (qetzal @ May 17 2006,16:54)
P.S. If you want a much better demonstration of why we accept evolution, and why it's so useful, please read incorygible's post on May 16 at 22:42 in this thread. (Minor quibble for incorygible - should you have used "ape" in place of "primate?" Is gulo broken in all primates, or just the apes? That aside, great post!;))

All primates (that we know of), as well as some flying mammals, going back about 40 million years, as far as I can tell.  And thanks!

Date: 2006/05/17 14:29:26, Link 128.100.72.100
Author: incorygible
Quote (sir_toejam @ May 17 2006,19:16)
not flying monkeys.

You're right.  Those flying monkeys definitely make ass-sore-a-bit.

Date: 2006/05/17 16:53:40, Link 128.100.72.100
Author: incorygible
Quote (Henry J @ May 17 2006,21:36)
Are the bats broken in the same place as in primates?

Henry

Don't think so.

Unfortunately, at the moment I can't find the reference that mentioned the flying mammals, so I don't know exactly what flying mammals we're talking about here nor how their GLO gene is broken (if we've even looked at it yet).  However, from  Challem and Taylor (1998):

Quote
Inactivation of the simian GLO gene must have occurred following the divergence from prosimians (ascorbate producers), but before the divergence of New World monkeys (GLO deficient): thus, between 55 and 35 million years ago.


This would seem to exclude bats.

Date: 2006/05/17 16:56:22, Link 128.100.72.100
Author: incorygible
Quote (normdoering @ May 17 2006,19:32)


Ugg. That was bad -- why would you -- no! I  won't ask-it.

Sorry.  And thanks for making it worse.  Took me a second, since I was going for ascorbATE, but yours is just as good.

Ugh is right.

Date: 2006/05/18 04:40:59, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 18 2006,09:16)
If it was one original kind, then there would originally have been a tail and it would have been lost over time.  Creationism predicts the loss of function, not gain.  There may, however, have been a separate monkey kind and an ape kind.

Okay...we're pretty much in agreement here.  So since we have the EXACT same evidence (and note that the "prediction" of loss of function isn't it) that humans lost their tails in the same way as apes, then might we predict that Adam and Eve had a tail?  (If not, why not?)  Furthermore, given that whole "in His image" thing, might this imply that God has a tail?  Cool!

(Might be better to invoke your ambiguity and fall back on that separate monkey-kind thing!;)

Date: 2006/05/18 05:35:00, Link 128.100.72.100
Author: incorygible
Quote
Look, Incorygible.  I'm a businessman with a science/engineeering background and a financial contributor to causes, I'm politically involved, I'm an apologist for YEC, and I'm a little bit like an investigative reporter at the moment.  If you don't want to accept the role of "Evolution Apologist" and jump on the opportunity to make your theory look plausible to an outsider, then don't.  No one is making you.   The ape/human questions and the Creation/Evolution controversy are absolutely to vital to society.  I'm spending 4+ hours a day on this effort. You can't say I'm not putting in any effort.  Now, if you don't like your role, then you don't have to assume it.  On the other hand, if you want to stick around and not get mad, you might have some fun. Others have said they are having fun.  You can too.

Dave, I'm in science.  (I wouldn't say I'm a "scientist", because I don't have the PhD membership card.)  I don't deal with apes, humans, vitamin C synthesis, or microbiology.  I work with fish and trying to save the buggers from going extinct.  But the stuff we've been spending hours a day on is rather elementary biology.  Now, I have enough memory of evolutionary basics to help people (including undrgrads) understand them.  And I think you'll agree that I HAVE assumed that role in answering your questions.  I have been no more snippy with you than I would have been with a sanctimonious student.  But you're right -- I'm not having fun anymore.  That's because I don't think you've fulfilled your stated role.  When I asked you some pretty direct questions (take the hamster one, for example), you pled that it wasn't your role to answer them.  I didn't need the answers, Dave.  I knew them.  They were there for your consideration and education (consider it a take-home exam).  When you don't reply, if not directly, at least in a way that shows some absorbance of the material, well, then I have to believe you didn't consider them at all.  Which means I can't perform the free-education role you've given me.
 
Quote
By the way, I have encountered scientists who seem very resentful of businessmen in general because they feel that businessmen "use" them for their own purposes.  Do you feel this way?  The truth is that both businessmen and scientists are necessary.  Businessmen need scientists to invent and discover new things.  Scientists need businessmen to market their innovations.   And by the way, apologists and politicians are necessary too.  Your side has a famous apologist in Richard Dawkins.  Why shouldn't our side have some too?

No, Dave, I don't feel this way.  But if somebody with an MBA tried to tell me how science works, he'd get the same response that I would if I tried to tell him how to manage a corporation.  I work with anglers, aquaculture industry, government agencies, politicians, NGOs, the general public, and a whole suite of others.  But at the end of the day, I live in the economy of ideas, and I can market those myself.  Nobody goes into evolutionary biology for the money, Dave (though the fame and women are nice).  And even Richard Dawkins didn't go into it for the apologetics.
 
Quote
Again, scientists do much wonderful work.  Where they go wrong is when they write volume after volume of speculation about how the immune system might have evolved and similar things.  They would be much more productive if they hypothesized that it was designed and studied it from that perspective.

Again, Dave, why do you think you know where scientists go wrong?  You've admitted you're not on their level in their respective fields.  I would never presume to tell you where pilots go wrong.  Do you honestly believe those volumes and volumes to be nothing more than fevered imaginings of the delusional? Do you honestly believe that this "perspective" you offer can lend anything to their investigations?  Because if you truly believe this, and if you are a businessman, you should be ALL OVER this easy way to money.  After all, the current crop of scientists aren't doing anything worthwhile, and you seem to know how to correct that, given your science/engineering/religious background.  Why not cure cancer with your "design perspective"? As a politically active businessman who wishes to contribute to humanity and help the YEC cause, would there be anything better?
 
Quote
I understand there is no free lunch.  I was born in poverty and have worked very hard to be where I am now.  No one asked you for a free lunch.  Some of you act as if I am asking you to give me a biology degree for free or something. Again, I am basically a YEC apologist and an investigative reporter asking for a convincing story.  If you don't want to give it, then you don't have to.  If I were in your shoes, though, I would want to try to give a convincing one.

So was I.  So did I.  I have tens of thousands of dollars to pay off in order to earn my understanding of science.  I have a decade of sleepless nights, (relative) social obscurity, failed relationships and poor health to shake off for it.  It was a good investment.  You think you know what you would want if you were in my shoes, but this shows the same presumption.  You are not the first YEC to demand convincing, Dave.  I got interested in this whole affair (I used to not care, just do what I did and let other people believe whatever they wanted) when a YEC (in similar shoes to yours?) sent me a scary fire-and-brimstone e-mail because may name appeared on a university website for teaching a course in evolution.  I'm not here to apologize, Dave.  I'm not here to evangelize (I still believe people can believe whatever they want).  I'm here to defend the boundaries of our separate magisteria.
 
Quote
Incorygible, that's not the same thing ... read my quote again.  I asked if anyone has knocked out the "C" in rat GULO at the position indicated in Faid's article which I quoted.  You responded by saying "Yes, we spliced rat GULO into a human and it worked."  Hello?  That wasn't what I asked.  It's not the same thing.

Faid has already responded to this and where the misunderstanding lies.  And even if he hadn't, I am sorry that I assumed you were asking a question that had some actual over-arching relevance to the discussion.  I assumed you had learned enough by now to realize that "the missing C" was not the deletion we have been talking about (not even close). But yes, I assumed to much, with the proverbial consequences -- you just wanted to go down yet another rabit hole leading to a meaningless detail and pedagogical semantics.
 
Quote
Yes.  But I wouldn't get mad.  I'd just think it was funny.  The fact that people get mad about this stuff is interesting to me.  Why do they?  Oh, I know all the superficial reasons ... I'm thick headed, etc.  But it seems like there must be a more basic reason for the frustration.

The first time, Dave.  The first time.  After explaining it ad nauseum, the humor would begin to lose its effect.  After hearing (and being hounded) about how your life and work is a delusional (or conspiratorial) lie for a few years on end, it might get a bit frustrating.  After one too many shrieks of "racism", misanthropy, genocide, Hitler, etc., etc., etc., you might start to actually get offended.  After a call to Homeland Security, you might be a little appalled (thankfully that one hasn't happened to me -- yet).  And I think you (of all people), might be a little offended by being accused of being in league with the devil and on a fast-track to ####.
 
Quote
"Dave, you're simply not equipped to evaluate the evidence in favour of evolution."
I agree with you.  I am not equipped.  This is why I am giving evolutionary biologists the chance to speak for themselves and explain why their theory is plausible.  If they cannot do this, who can?  I understand that no one is under any obligations here.  There are certain roles, though, and I can tell you that I am certainly not going to assume the role of 'Evolution Apologist.'  So that leaves the job to either you guys or else no one at all. I think people here rightly want to try to answer these questions as best they can because they truly believe in their theory.  And it is important to them for others to understand and agree with this theory.  We all want people to agree with out theories.

Dave, you accuse others of being unable to comprehend what you write, then come back with this?  We know you admit you cannot EXPLAIN (much less investigate and produce) the evidence for evolution.  The post you quote (like others) stated you cannot even EVALUATE it.  If you are here to be "convinced", then you don't agree with this.  I don't give a flying monkey whether or not you agree with what I "believe".  I didn't go to all this effort for your affirmation, Dave.  I'm a researcher and a teacher -- I value education over ignorance.  And even though I long ago gave up on educating you, there are the lurkers (I was one for a long time) who might be getting something out of all this.  Plus, there are the interesting discussions with people who actually do know what they're talking about (many more than I).  I don't care what they "believe", either.  Affirmation and consensus with the norm is not a high priority for me.  Did I not mention I'm in science?  We THRIVE on DISagreement, Dave.

 
Quote
"The convergence for this deletion may not be unlikely, but primates share dozen mutations. And these mistakes in the broken GULO produce the same phylogeny built with other working genes. This cannot have happened by chance. Would you drop this argument?"
Why would I drop the argument if you agree with me that the deletion is not unlikely?

Honestly, do you even read, Dave?  This reply, with the actual quote right above it, proves beyond a shadow of a doubt that you are illiterate, dumb as a brick, and/or disingenuous.
 
Quote
I do know there are a few mutations that could be construed as "upward" or "increased or new function."  Do you know of many like this?  To disprove Creationism, it would take a multitude of  mutations like this.  And by multitude, I mean thousands or even millions.

Er, no Dave, it wouldn't.  You YECs make the claim that this is absolutely impossible.  In the freaking paragraph above this quote, you claim that "THERE IS NO SUCH THING" as "upward evolution".  That means it takes ONE occurrence to disprove this claim, and this claim IS the root of Creationism.  Your lack of logic, not to mention consistency, is astounding.
 
Quote
"Let's simplify. Is there any conceivable objective observation (or combination thereof) that could disprove Creationism? If so, please explain."
Yes.  There are many possible ways to disprove Creationism, and evolutionists have been hoping for years that just such evidences would come to light as more is known.  They just haven't yet.  The opposite is actually happening.

Nice answer, Dave.  And you wonder why we call you intellectually dishonest.
 
Quote
So there you have it.  We're on page 16 of this thread, and there has been some very good discussion.  After all of this, of the two possible scenarios that I mentioned ...
   
Quote
Scenario 1-The GULO gene could have broken independently in apes and in humans. The Inai article shows that it did indeed break independently in guinea pigs, so why should it not break independently in apes and humans?       OR ..

Scenario 2-The "broken" GULO gene was never a functional GULO gene in either apes or humans.  It always has had some unknown function and still does to this day.  Argystokes called this possibility "pseudo-GLO" and rightly asserted that we should be able to find this gene's homologue throughout the animal kingdom--even in animals that do have a functional GULO gene.

it seems that Scenario 1 is the most likely, although who knows what will turn up as more is known about "pseudo-genes."

I have confirmed my suspicion that Dr. Max's assumptions are not necessarily warranted, although I would not go so far as to say they are wild assumptions.

It is clear to me that the theory that apes and humans had a common ancestor, while it has some apparent support, is by no means a closed case, and there is plenty of evidence supporting Common Design Theory as well.  I don't think we can 'prove' either one of them.  And if I were in Renier's shoes, I certainly would not have abandoned the YEC position because of this issue.

So, as you probably expected would happen, my position remains that Apes are Apes, and Humans are Humans, and as far as anyone really knows for sure, it's always been that way.

Thanks for your participation!  I have nothing further to add on this thread.  If anyone wants to keep going, by all means, go ahead.  But I have completed what I set out to do.

I will now spend all my time presenting evidence for a Creator God, a Young Earth, the Global Flood, the accuracy of the Bible, etc. etc. on my other thread.

Thanks again.

AF Dave.


See no evil.  Hear no evil.  Speak no evil.  And for gawd's sake, never, ever learn a freaking thing.

*edited to include a few additional quotes for clarity

Date: 2006/05/18 06:03:42, Link 128.100.72.100
Author: incorygible
I would really like to separate and preserve for posterity the following afdave doublethink.  Two comments, in the same post, appearing adjacently:

Quote
The evidence shows that there is no such thing [as "upward" evolution], but Evolutionists wish there were.  To me it means addition of wings where there were no wings before, addition of eyes where there were no eyes before, etc.  The reverse happens a lot, however.  Organisms lose function quite often and Creationists predict that this will continue until the time that the Creator RE-creates all things.


Quote
I do know there are a few mutations that could be construed as "upward" or "increased or new function."  Do you know of many like this?  To disprove Creationism, it would take a multitude of  mutations like this.  And by multitude, I mean thousands or even millions.


Furthermore, this is from the man that kicked off (and concluded) this thread by arguing that, if the GULO gene broke once, it could break all the time, in the same manner, in "independent" kinds, and thus we should throw common descent out the window. He referenced an AIG article that argued:

Quote
"If a strong pattern of pseudogenic ‘shared mistakes’ can happen even once in an evolutionarily impossible manner, it can also happen again and again in an evolutionarily consistent manner. Now, more than ever, Occam’s razor dictates that ‘shared mistakes’ be approached in terms of parallel mutations rather than common evolutionary ancestry."


It's so beautiful, I think I'm going to cry.  Good news, Dave -- I'm having fun again!  ;)

Date: 2006/05/18 11:41:10, Link 128.100.72.100
Author: incorygible
Quote (sir_toejam @ May 18 2006,16:37)
I agree with the others here; get on with presenting your evidence, or change gears and get on with presenting more humor.

but don't pretend one is the other.

Indeed.  The "evidence" is much, much funnier.

Date: 2006/05/19 04:02:13, Link 24.42.173.36
Author: incorygible
Quote (afdave @ May 19 2006,05:26)
Oh really?  How much money do you want to risk that I'm wrong?  Here's the specific statement that I am defending:

1)  AF Dave says that Spanish and Portuguese were essentially the same language until 1143 AD when Portugal broke away from Spanish control under a French nobleman by the name of Henry of Burgundy.  From this point on, the languages diverged into the modern situation.  The primary influence on the linguistic divergence was the French language.

2)  Rilke and Toejam say I am wrong

How much are you willing to bet?  

(You need a Paypal account to be eligible)

That depends.  Are we allowed to use the same "arguments" and "logic" to establish the complete and utter independence of the Portuguese and French languages as you use in the apes/humans thread?

After all, while French and Portuguese share many, many letter combinations, I can show you that the word "idiot", common to both languages, is also common to German and English. Since no one in his right mind would argue that these languages are related to French and Portuguese, it is obvious that any and all shared letter combinations (and word meanings, grammar, etc.) could arise independently in each language, and there is absolutely no reason to infer common descent ("common design" theory is just as good!;).

When do I get my money?

Date: 2006/05/19 06:51:45, Link 128.100.72.100
Author: incorygible
Quote
I admit that I am not on their level, but there is a relatively small but rapidly growing group of scientists who are disillusioned with Darwinism ... Michael Denton, Michael Behe, Dr. John Baumgardner of Los Alamos to name just a few.  When top notch people like this stand up and say there's a problem, I at least investigate.  Now why is that so unreasonable?


It isn't "unreasonable" to "investigate", though I'd question "rapidly growing" and "top notch".  Dave, I'm sure you'll find most posters here with whom you are arguing (myself included) are very familiar with the work of Denton, Behe et al., not to mention AiG, DI, etc.  We've investigated.  (Did I not walk you through such an investigation when it came to why Dr. Wieland's article was wrong, to the extent of hypothesizing as to where he went wrong in his thought process?)  We read and evaluate the literature, Dave -- in this case, even when it is not peer-reviewed and up to the usual standards we demand.  Every week, papers are published that challenge this aspect or that of current theory (this is the disagreement we thrive upon).  We certainly pay attention when someone "stands up and says there is a problem".  It happens ALL THE TIME.  Look at that new Nature paper others have mentioned, which seriously rewrites the timeline and process of human and chimp speciation.  It's our duty to read these claims critically to figure out whether they have merit.  That is how science stands or falls.  We are not ignorant of the arguments made by IDists and YECists.  We have patiently investigated, reviewed, and criticized them as we would real scientific papers.  Look back and you'll see that every time a Creationist such as yourself cries wolf, we grab our guns and go check it out, no matter how many times doing so invariably results in simply patting him on the head and telling him that the shadow he's wailing about is most definitely not a wolf.

 
Quote
I have never said the current crop of scientists aren't doing anything worthwhile ... nothing of the sort.  I have consistently said they are doing many great things and I reap the benefits.  But their thinking on origins is highly questionable and the answer to this question has major implications on society.  And I agree that trying to cure cancer from a "design perspective" would be a very worthy goal.


Fine.  You just say the current crop of evolutionary researchers (like me) are doing questionable science involving dubious thought processes.  You'll forgive me if I don't lose any sleep, Dave, since you have demonstrated you don't have a clue as to what we're doing and why we're doing it.

 
Quote
I know that some people who wear the YEC label do irresponsible things like this ... I am sorry for that, but I cannot stop them.  I can only do what I do and I for one do not say that you are 'evil' or that you should even quit teaching your views on evolution.  Go ahead and teach them.  Just don't shut out other views.  Honesty would dictate that your view is just that--a view.  The origin of life is not a thing you can 'prove.'  So just admit that and let others express their views as well.  That's all.


If I applied your standards of "proof" to ANYTHING in science, we'd have nothing to teach at all.  If, by "origin" you're talking about abiogenesis, I don't teach it.  If you're talking about the origin of species, it hasn't been "just a view" for 150 years, and it would be a lie to teach it as such (Introduction to Postmodernist Theory is a whole different department and a long walk across campus for students who want all knowledge taught as "views").  And come back down off that cross, Dave.  I never made you guilty by association.  You asked why we seemed to be impatient, frustrated, offended, and maybe even angry with this argument.  Part of it has to do with trying to teach the unteachable.  Part of it has to do with a Groundhog-Day-like exasperation.  And part of it has to do with you referring us to sites like AiG, as a supposedly reliable source for science, where we also find ranting articles accusing "evolutionists" like ourselves of the same racism, Naziism, lack of morality, stupidity, damnation, etc. ad nauseum, contained in that original YEC email.  This is a tacit endorsement of those arguments, Dave, but I never held it against you.  Just trying to help you get a better idea of walking in our shoes.

 
Quote
She says the convergence may not be unlikely.  She says that primates share dozen mutations.  And these mistakes in the broken GULO produce the same phylogeny built with other working genes. This cannot have happened by chance.  

I don't understand the second sentence, but why is it so unusual to share "dozen mutations"?  Guinea pigs and humans share a lot of mutations too, right?


This is important, Dave.  It's something you might wish to rectify.  Because until you understand that sentence, it's 'round and 'round and 'round the mulberry bush with you.  However, since you plead ignorance (as opposed to laziness, disingenuity, or dishonesty), I will try one last time (though I have my suspicions that those other descriptions are playing a role here).

The mutation that prevents humans and guinea pigs from synthesizing vitamin C is in the same gene (i.e., the GULO pseudogene).  It is NOT the same mutation (different deletions).  In the time since that gene lost its function via those (different) deletions in humans and guinea pigs (tens of millions of years in each lineage), many base-pair substitutions have occurred in this selection-free pseudogene.  A somewhat greater than expected proportion of those substitutions (36% observed vs. 25% expected) are shared, suggesting the involvement of mutational hotspots.  This is interesting, but not relevant to the discussion at hand.  Saying that humans and guinea pigs "share the same mutation in GULO" is misleading.  Humans and guinea pigs both have mutations that make GULO non-functional.  They share a slightly higher percentage of substitutions since the original mutations occurred.

I happen to disagree that the "convergence" between human and guinea pig GULO is at all significant (you're not suggesting that loss of function is "convergent", are you?).    But even if it was, you are missing the fact that this is one gene in thousands, and two species in millions.  Thousands of genes and millions of species that line up to form an overwhelming pattern of common descent that matches the pattern inferred earlier from the fossil record.  If you want to question common descent, you can't discuss single genes outside of this context, Dave.

In other words, yes, guinea pigs and humans share "dozens" (much, much more!;) of genes and mutations.  Apes and humans share "dozens" (much, much more!;) of additional mutations beyond this.  And so on and so forth.  This is the reality of common descent.  Learn it before you tilt at windmills.

Date: 2006/05/19 07:31:43, Link 128.100.72.100
Author: incorygible
Quote (Russell @ May 19 2006,12:23)
Quote
A somewhat greater than expected proportion of those substitutions (36% observed vs. 25% expected) are shared, suggesting the involvement of mutational hotspots.
If you refer back to the exchange Jeannot & I had on this, I think you'll see that you don't have to appeal to anything so esoteric as mutational hotspots. The high percentage of substitutions between* rat and guinea pig sequences shared with the substitutions between* rat and human probably reflects nothing more puzzling than the fact that the rat lineage evolved rat-lineage-specific mutations in the millions of years since it diverged from the guinea pig. Unless, of course, we're talking specifically about substitutions that would result in loss of function (like missense mutations) - but I don't think we are.

(Note the careful use "between X and Y" rather than "from X to Y", since it's this thinking that somehow the rat sequence == the ancestral sequence that generates all the confusion on this point.)

Good point -- I forgot about the rat GULO being used as the ancestral sequence.  So there you go, Dave -- many of these "shared" substitutions in human and rat aren't really "shared" at all.  That is, these mutations didn't happen twice (once in the human and once in the guinea pig lineage), but were present in the LCA of human, rat and guinea pig and mutated once in the rat lineage.  My (and Inai's?) bad.

Date: 2006/05/19 08:28:25, Link 128.100.72.100
Author: incorygible
Quote (jeannot @ May 19 2006,13:12)
For a given couple of mutations occurring independently in two lineages at the same locus, the expected convergence is indeed 25%. But the overall probability of convergence is much lower, considering the probability of occurrence of two mutations at the same locus, which is far lower than 25% if mutations are rare (recent divergence).
25% is the expected convergence, only if mutations are so frequent that the homology between two diverging sequences cannot be detected. (ie : 100% chance of mutating at the same nucleotide).

(Is my English clear enough?)

Perfectly clear, jeannot.  And I suspected the 25% was a little simplistic.  So really, to say anything at all about human and guinea pig "convergence" in GULO as it relates to this discussion, we need to know the following:

1. What substitutions occurred independently in the rat lineage?  These are not "convergent" substitutions between humans and guinea pigs, and should be eliminated from the analysis.

2. Of the remainder, what overall degree of convergence do we expect for neutral substitutions in the 75-million-plus years since the LCA between humans, rats and guinea pigs, and non-neutral substitutions since the gene "broke" in humans (~40 mya) and guinea pigs (?unknown?)?  How does this compare statistically to our revised estimate of convergence (i.e., after we have removed the rat-only substitutions)?

3. How would mutational "hot-spots" at some of these loci, if they occur, change our expected convergence in (2).

Seems like this kind of leg-work should have been done by AiG before touting the guinea pig's "36%" convergence as an argument-killer, don't you think, Dave?

Date: 2006/05/19 15:27:31, Link 24.42.173.36
Author: incorygible
Quote (Russell @ May 19 2006,16:33)
The more informative thing here is that, far more than you would expect from chance alone, you have substitutions in both human and guinea pig DNA at so many of the same positions.

Which according to Dave means common descent is in trouble.

It's the end of the theory as we know it, and I feel fine...

Date: 2006/05/19 15:37:07, Link 24.42.173.36
Author: incorygible
Creationism Canadian style.  I knew we'd find our own breed someday, eh?  Ironically, it's our left-wing body politic (for you Americans, that's so far left it makes Hilary Clinton look like Ann Coulter) that I see supporting this.  Ugh.  Gimme some more beer and hockey, 'cause this ain't gonna be pretty.

Date: 2006/05/22 04:44:15, Link 24.42.173.36
Author: incorygible
Quote (Russell @ May 22 2006,09:13)
Anyone see anything wrong with this logic?

Nope, nothing at all.  I used it myself to try to claim the $500 in the "Prove Evolution" thread

Quote (Incorygible @ May 19 2006,09:02)
Are we allowed to use the same "arguments" and "logic" to establish the complete and utter independence of the Portuguese and French languages as you use in the apes/humans thread?

After all, while French and Portuguese share many, many letter combinations, I can show you that the word "idiot", common to both languages, is also common to German and English. Since no one in his right mind would argue that these languages are related to French and Portuguese, it is obvious that any and all shared letter combinations (and word meanings, grammar, etc.) could arise independently in each language, and there is absolutely no reason to infer common descent ("common design" theory is just as good!;).

When do I get my money?

 I assume the cheque is in the mail.

Date: 2006/05/22 05:50:27, Link 24.42.173.36
Author: incorygible
Quote
 
Quote

I haven't read Dr Max's argument but if you think you have refuted the claim that the GULO gene does not support common descent you are sadly mistaken.

You haven't even read the article and yet you disagree with me when I say I have refuted it?

Whoa!   ... well, I was warned about this kind of stuff ...


And we have firsthand knowledge of this kind of dishonesty and puffed up claims to moral and intellectual superiority.  Despite the mistaken double negative ("refute" + "does not support"), it is clear to anyone with a modicum of literacy that Chris Hyland's claim is completely independent of the Max article.

 
Quote
You guys cannot get your story straight.  You say it's the similarities in the broken part, Jeannot says "you can't consider the loss of function alone as a valid evidence for common descent, because hundreds of mutations can break a gene."

Come on guys. Face it.  Apes and humans have some striking similarities, I agree.  Apes and humans both have what appears to be a broken GULO gene.  So what?  This does not prove Common Descent.


Given the effort put into repeatedly correcting you on what evidence is at issue here (especially regarding the broken GULO gene), you are now either too dense or too dishonest to debate any further.  Please feel free to claim glorious victory over the army of strawmen you erected on our behalf -- the sheer might of your lack of comprehension and disassembly was indeed quite overwhelming.  Well done.

I'll now join the ranks of those too exasperated with your idiocy and disingenuity (which you'll no doubt interperet as the "strength" of your position) to take you at face value as someone capable of rational discourse.  You have demonstrated unequivocally that you are not.

Date: 2006/05/23 03:34:57, Link 128.100.72.100
Author: incorygible
Quote
Romans 16:18 For they that are such serve not our Lord Jesus Christ, but their own belly; and by good words and fair speeches deceive the hearts of the simple.


Interesting.  Millennia before Mummert, we have a clear warning against attacks by the "intelligent, educated segment of the culture."

Date: 2006/05/23 04:13:06, Link 128.100.72.100
Author: incorygible
afdave sends out two EMPs (Empty Myopic Projections) in rapid succession that knock out irony detectors around the globe:

Quote
Drew, my friend, World Book and Brittanica and Wiki are not going to have enough detail to show you the enormous French influence on a tiny country such as Portugal during the 12th century.  Go to your local public library and look up Portugal in a Medieval Encyclopedia.  There you will find the "thousands of French knights" coming in, the intermarriage with French nobility, the conquest of Lisbon, and the subsequent adoption of the dialect of Lisbon as Standard Portuguese.  Now, if all that is unconvincing to you, then I can't help you.


Quote
Namely, that some people are so committed to being right that they will dismiss mountains of evidence that is literally hitting them in the face.


This is followed by the afdave two-step, equivocating the nested hierarchies of shared functional genes (which he believes are commonly designed) with the same hierarchies in mutational errors (which he does not believe were designed at all).  Despite this claimed position, Dave nevertheless appeals to design to explain not shared function, but shared mutation:

Quote
Quote
Dave, are errors in broken genes part of a design?

No.  According to YEC theory, organisms were designed perfectly in the beginning.


Quote
You all are simply saying that it is one of many "pieces of evidence" which I agree with, but I would simply say "this gene is similar" and "all the genetic material is similar."

But the silly thing is that I already knew this before we started this exercise.  We did not need to go slogging through all the intricacies of the GULO gene to prove to me that Humans are genetically similar to Apes. I agree and this is perfectly consistent with Design Theory.  As I have said many time, the similarities between a Ford Aerostar and a Ford Fiesta point to common design, not common descent.


Quote
My position is the same as Camp's when he says ...
"It may be that the nested hierarchy of living things simply is a reflection of divine orderliness."


At this point, Dave knows full well we're not talking about making Fiestas and Aerostars, but about destroying them in a very obvious patterns of shared defects.  And we're not talking about "divine orderliness", but the disorderly "curse" that Dave believes followed the Fall.  Furthermore, Dave knows full well that, whatever the validity of "common design" as an explanation for nested hierarchies in DNA, it completely fails to account for admittedly non-designed errors.  He has provided no explanation for why those errors should follow the same pattern as his purported "common design" (Fiestas and Aerostars), and falls back on false equivocation to dodge this glaring shortcoming.  His obvious swapping of one phenomenon for the other (remember, where we see only the one phenomenon of common descent, he sees two: common design followed by random degeneration after that whole fruit thang) fools absolutely nobody, with the possible exception of himself (though I tend to suspect this is calculated dishonesty at this point).

Quote
Once again, it is clear to me that Apes are Apes and Humans are Humans, and as far as anyone really knows, that's the way it's always been.


Dave, let's say for the sake of argument (this is very much a hypothetical from where I'm sitting!;) that you had actually successfully supported your claim that Portuguese = Spanish + French.  Let's say you had provided page upon page of explanation and evidence, references, sources, pedagogical techniques, etc., to demonstrate this.  Let's say it was clear, not only in your mind, but in every reader's , that you had torn Rilke a new one.  And yet, after all this (very hypothetical) effort, Rilke had concluded and ran from the thread with the following:

Once again, it is clear to me that Spanish is Spanish, French is French, Portuguese is Portuguese, and as far as anyone really knows, that's the way it's always been.

What would your opinion of your so-called opponent be then, Dave?  Liar?  Coward?  Ignoramus?  Blowhard?  Pissant?  Troll?  A$$hole?

Date: 2006/05/24 05:01:07, Link 128.100.72.100
Author: incorygible
Quote (Russell @ May 24 2006,08:18)
Quote
OK.  Shoot me down if you can!
Nope. Not taking the bait this time. I suspect there's no one reading this who doesn't recognize the BS, and you have convinced me that you are literally ineducable.

Ditto.

Date: 2006/05/24 05:20:14, Link 128.100.72.100
Author: incorygible
Quote (afdave @ May 24 2006,09:28)
Well, Renier, I cannot say for sure since I was not there (as Ken Ham likes to say), but there are some pretty simple possible answers if you open your mind up a little.  My theory is that it broke AFTERWARDS.  The reason the GULO gene is so similar is because ... drum roll ... Apes and Humans are so similar!!  Now, that wasn't too difficult, was it?  For those of you that still don't get it, just think of the old Ford analogy.  Remember I said that Aerostars and Fiestas are 95% similar, like Chimps and Humans?  (Well, I don't know if it's 95, but probably close enough for the analogy).  OK.  Now all Fords have alternators, right?  And probably the Aerostar alternator is going to be a little bigger than than the Fiesta alternator, maybe even a few design differences.  So the alternator is like the functional GULO gene, OK.  Is everyone with me?  Now ... what happens after about 5 years of driving these cars?  The alternators might break.  Pretty believeable, right?  Do they break in the same way?  Maybe, maybe not.  Now, where did these two vehicles come from?  A COMMON DESIGNER.  Imagine that!  Now why is this so hard for you to picture with Apes and Humans?

Dave, you can't even keep the relevance of your own analogies straight.  The problem is not just one of Aeorstars and Fiestas.

Look at the sequence data scattered throughout this thread (edit: sorry, the ape thread -- I get lost trying to follow Dave as he bounces around) that show chimps and humans are MORE SIMILAR than chimps and gorillas, or chimps and orangutans, or gorillas and orangutans...  Even better (though highly unlikely), read up on the actual genetic context, in toto, within which we discuss apes, humans and vitamin C.

To be relevant, your car analogy must reflect your premise of "created kinds", and I've adapted it accordingly.  Now, you put chimps, gorillas and orangutans in one "kind" (the most concrete definition of any kind you've given).  You put humans in a separate, special kind.  So riddle me this...

If the ape (Ford) kind was originally created, and then "evolved" (okay, degenerated since the Fall) into Fiesta (chimps), Aerostar (gorillas) and Taurus (orangutans), then what the ****ing he!! is that Toyota Echo (humans) doing in there, sharing MORE similarities to the freakin' Fiesta (chimps) than any other Ford vehicle (ape), not only in how it is designed (lots and lots of functional genetic sequences), but in exactly how its alternator, cupholders and silly little handles above the doors have fallen apart since it was designed (lots and lots of non-functional sequences, such as pseudogenes like GULO)?  What kind of industrial espionage and manufacturing piracy is your Creator involved in here?

I know you will now argue for the similar purpose/market of the Ford Fiesta and Toyota Echo, but that doesn't help you one bit with the "kind" problem: doesn't your "theory" positively demand that the original created kinds be more similar to each other than to another kind?  Else what is the purpose or meaning of this whole "kinds" thing anyway?  If the human kind shares MORE common "design" with a certain member of the ape kind than either shares with the other ape kinds, what does this mean to you?

Date: 2006/05/24 05:46:43, Link 128.100.72.100
Author: incorygible
Afdave:

Quote
This is why I don't need to spend hours and hours researching documents with Arden.  This is so obvious, folks.


And THIS kind of "reasoning" is why it is generally a safe bet to assume the worst when it comes to attempted rational discourse with Creationists.

Quote
There seems to be a common misunderstanding among evolutionists that Creationists think we invoke "GODDIDIT" at every turn, thus killing scientific inquiry.  This is the opposite of what we do (well, can't speak for everyone ... when I say we, I mean at least ICR, AIG and CRS)....
Yes, we could discover multiple universes and then we might see that the odds are not so staggering after all.  But we haven't yet.  So the best explanation that we know of today is that Someone set the parameters, because the odds against them being set as they are are so large.  Note that these parameters are both complex (there are a lot of them) and they are specified (if you change any of them, everything dies).  I don't necessarily agree with everything Bill Dembski is doing, but here is where he shines, in my opinion.  Specified complexity does not arise by chance.  It requires intelligence.  Why would scientists like yourselves be closed minded to this possibility?  It seems to me that YOUR mindset, not ours is less progressive.  The same logic applies to Biological Machines.  The best explanation we know of today is that "Someone designed them."  This is because evolution does not provide the necessary mechanisms to create the machines, and we observe intelligence every day making cool machines, i.e. human intelligence.  We are very familiar with a quite reasonable explanation already.  Why would we not even propose the idea and test it.  Of course, something may come along to make us discard Intelligent Design.  But nothing has yet.  As I said, true macroevolution has not been demonstrated yet, and in my opinion never will.


Glad you didn't invoke "GODDIDIT" there, Dave.

Quote
See, we want to get to these kids with the truth at a young age, so that they will not go wrong in science like you did when they grow up.


Scary, Dave.  Just plain scary.  Never come near my kids, and I'll return the favour, m'kay?  By the way, I thought you were most interested in discovering the "truth" (as we are)?  Indoctrination first, eh?

Quote
I didn't calculate them which is why I just used the general 1 to 50 gazillion googolplex to illustrate the enormity of the odds against a finely tuned universe.


Erm...Dave...if you give a number as an answer, there #### well better be a calculation involved, no matter what the margin of error in the result.  Back of the envelope is fine (so long as it is represented as such), but we better be able to look at the freaking envelope.  Welcome to science, big guy.  You're not allowed to pull numbers out of your a$$.

Quote
I would like to know how many of you would sign on to BWE's promise.  Because I am going to do just that.  Will you all become Creationists if I do?


Oh, he11 yeah.  Dave, if you can provide me with rigorous positive evidence that the earth is less than one billion years old (i.e., evidence that matches the standard set by the many independent methods of estimation establishing the current accepted age) , I will join the church of your chosing and pray/observe accordingly.  If you get anywhere near the 6,000 years you believe in, I will even do so sincerely.  I'll be watching, but I won't be practicing any hymns yet.

Quote
Because the evolutionary science establishment cannot see the forest for the trees.  They are so blinded by their beloved theory that they are overlooking the most obvious evidence for Intelligent Design that it is quite ludicrous.  The only choice then for YECers and IDers is to "go public."  Since scientists are not educating the public responsibly in the area of origins, someone must.  So we do.  We are basically doing a political "end run" around obstinate, head-in-the-sand scientists.  Note that we only oppose a small portion of what scientists do.  There is much good work that scientists are doing in spite of their "evolution glasses."  We do not oppose this.


Ah, it's been a while since I've marvelled at such breathtaking hypocrisy and rationalization.  Good show!  Well, no, I guess that's not quite true, seeing as how we get your American news networks up here.  But good show anyways -- I missed my dose of Jon Stewart last night (#### reruns), and this is almost as good!

Date: 2006/05/24 09:41:34, Link 128.100.72.100
Author: incorygible
Quote
50 gazillion googolplex is not a number last time I checked.  Is it a number to you?


Tee hee.  Whoops.  Missed the "gazillion" part.  Chalk it up to an oversight on my part.  Mind you,it's not within 50 gazillion googolplex orders of magnitude as this one...

Quote
No one has EVER told me that Humans and Chimps share more genetic similarity than say Chimps and Gorillas.  Is this true?


Wow.  Just...wow.  You can sing and dance about percentages and similarities all you like, Dave.  But at this point, you may as well abandon anything from the fields of molecular biology and genetics, because you obviously don't have a clue what the he11 you're talking about.  All this talk about genes and chromosomes and pseudogenes and...and you didn't know this?  Wow.  There is no way someone could have actually read those dozens of pages of posts you have prompted, all pertaining to your initial claims in the realm of genetics, and NOT know this basic fact.  I'm speechless.  Wow.

Date: 2006/05/24 10:05:45, Link 128.100.72.100
Author: incorygible
Hey, Dave, here's a really interesting one among many.  Not only do the bulk of genetic data examined support that chimps are closer to humans than they are to gorillas, it turns out that this relationship holds for the pattern of gene activity in our brains (actually, in that very part of our brains that handles cognitive tasks):

Quote
Title: Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles
Author(s): Uddin M, Wildman DE, Liu GZ, Xu WB, Johnson RM, Hof PR, Kapatos G, Grossman LI, Goodman M
Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (9): 2957-2962 MAR 2 2004
Document Type: Article
Language: English
Cited References: 50      Times Cited: 32      Find Related Records Information
Abstract: Gene expression profiles from the anterior cingulate cortex (ACC) of human, chimpanzee, gorilla, and macaque samples provide clues about genetic regulatory changes in human and other catarrhine primate brains. The ACC, a cerebral neocortical region, has human-specific histological features. Physiologically, an individual's ACC displays increased activity during that individual's performance of cognitive tasks. Of approximate to45,000 probe sets on microarray chips representing transcripts of all or most human genes, approximate to16,000 were commonly detected in human ACC samples and comparable numbers, 14,00015,000, in gorilla and chimpanzee ACC samples. Phylogenetic results obtained from gene expression profiles contradict the traditional expectation that the non-human African apes (i.e., chimpanzee and gorilla) should be more like each other than either should be like humans. Instead, the chimpanzee ACC profiles are more like the human than like the gorilla; these profiles demonstrate that chimpanzees are the sister group of humans. Moreover, for those unambiguous expression changes mapping to important biological processes and molecular functions that statistically are significantly represented in the data, the chimpanzee clade shows at least as much apparent regulatory evolution as does the human clade. Among important changes in the ancestry of both humans and chimpanzees, but to a greater extent in humans, are the up-regulated expression profiles of aerobic energy metabolism genes and neuronal function-related genes, suggesting that increased neuronal activity required increased supplies of energy.

Date: 2006/05/24 10:52:36, Link 128.100.72.100
Author: incorygible
Quote
Oh yes.  I've looked at your made up tree many times.  It's just that no one has ever shown me how much genetic similarity there is between Chimps-Humans vs. for instance Apes-Gorillas.  Do you have that data?  Are you telling me that Chimp to Human is for instance 98% and Chimp to Gorilla is only 95%?  Or something like that?


This is where a bit of research before spouting off really helps, Dave. Here you go, from:

Hacia. (2001). Genome of the apes. Trends In Genetics 17(11): 637-645.

I've gone to the effort of adapting Table 1 into % similarity (as opposed to % difference) to make it exactly what you requested (feel free to check out the original reference).  What follows then is the type of genetic sequence analyzed, % similarity between humans and chimps (HC), % similarity between humans and gorillas (HG), then % similarity between chimps and gorillas (CG), in that order.

Noncoding intergenic: HC=98.76%, HG=98.38%, CG=97.37%
Intronic: HC=99.07%, HG=98.77%, CG=98.79%
Pseudogenes: HC=98.36%, HG=98.13%, CG=97.86%
X chromosome noncoding: HC=98.84%, HG=98.53%, CG=98.5%
Y chromosome: HC=98.32%, HG=97.67%, CG=97.22%

Coding sequences:
Synonymous (Ks): HC=98.89%, HG=98.52%, CG=98.36%
Nonsynonymous (Ka): HC=99.2%, HG=99.07%, CG=99.1%
Amino acid divergence: HC=98.66%, HG=98.42%, CG=98.35%


There.  Notice how, no matter where we look at the DNA, HC is greater than CG?  Notice how HG and and CG tend to be very similar values, but both less than HC?  Could I optimistically cast past experience aside and assume that, just this once, you might understand how this corresponds to a pattern of common ancestry, with gorillas separating from the human-chimp line earlier than humans and chimps themselves diverged (i.e., that "made up" tree)?  Can you see what kind of trouble this genetic evidence spells for your "ape" and "human" kinds?

Pretty soon we will have a fully sequenced gorilla genome to put the nail in the coffin (i.e., we haven't looked everywhere yet), but the data are statistically significant: chimps and humans are more similar than chimps and gorillas.  If you want to stuff your God into the final rapidly closing gap (i.e., the fact that we have not yet fully sequenced the gorilla genome), feel free, but it will be awfully cramped for him in a few years.

Date: 2006/05/24 11:36:44, Link 128.100.72.100
Author: incorygible
Quote (Ladlergo @ May 24 2006,16:15)
Thanks for typing it up.

What can I say -- I appear to be quite masochistic when it comes to drive-by davings.

:D

Speaking of masochistic, I wonder if Dave realizes this is but a preview of the type of smackdown he's about to receive when it comes to the age of the earth?

Dave, while this poor wretch (cute! not offended in the least) warms up on Amazing Grace, perhaps you should meditate upon how well you UNDERSTAND exactly what evidence you've been TOLD not to believe.

As ericmurphy pointed out, your disbelief is on safe ground -- if you want to wave your bible and claim it trumps all, that's fine, but don't try to claim the science is on your side when you don't even know what the science says.  Also, you might want to reflect on your knowledge, education and sources.  Is it possible that someone who does understand what it is they are actively denying has kept some information from you (think chromosome fusions, chimp-human vs. chimp-gorilla similarities, etc.)?  Is there a reason that the Creationist "researchers" who are actually active in science (e.g., publishing papers of any type in journals) not only avoid contesting such established facts as the age of the earth and common descent of apes in the literature, but also prove impossible to nail down on whether or not they actually disbelieve these established facts (think Behe, Meyer, Dembski, etc.)?  Do you REALLY know enough to prove the entire realm of actual science wrong, Dave?  Is your assessment of your own knowledge at all affected by running into brick walls full-tilt with basic high-school material?  Food for thought.

Aaaaaaammmaaayyyyyzzzziiiiiingggg Grace...

 
Quote
Of course, I expect Dave to say that even 1% difference is meaningless.


Let's hope he didn't think the same thing when targeting missiles from a distance, eh?
???

Date: 2006/05/25 03:09:00, Link 24.42.173.36
Author: incorygible
Dave, if you could spare a minute away from evangelism and talk about science, I'm very interested in hearing your response to the homework I did on your behalf in your Creator God thread before you go.  Thanks.

(You know, where you were shocked that chimps are more similar to humans than they are to gorillas, and seemed doubtful that there were genetic data to back this up.)

Date: 2006/05/25 05:46:28, Link 128.100.72.100
Author: incorygible
Dave, while you're parsing the sequence similarities between chimps, humans and gorillas, I have this nagging fear that once again you're going to miss the point.  Those similarities are interesting, but they aren't as relevant as this is going to be.  (I nevertheless eagerly await your response.)

In the meantime, please pay attention to this post.  It’s going to be long, but I’m really going to try to meet you halfway.  It is often said by some overzealous "evolutionists" that Creationism makes no testable predictions.  While this is often true (“goddidit” predicts nothing), it is by no means universal: there are many places where Creationists say “goddiditthisway”.  We’re going to talk about one of those.  The age of the earth is another great example yet to come, but we’re going to talk about the relationship between humans and (other) apes.  We’re going to assume that your theory (I’ll bite the bullet and avoid the scare-quotes) is, as you have claimed many times, “just as good” as ours.  We’re going to use our respective theories to make predictions.  You game?

A few notes before we begin:  When I make predictions on your behalf regarding Creation theory, I will disregard age of the earth, resulting rates of mutation, etc., and assume only the following (correct me if I’m wrong on either): (1) God originally created a human kind and an ape kind, the latter of which includes gorillas and chimpanzees; and (2) DNA is a valuable tool for examining and comparing exactly how God designed his creations.  Are you okay with those?  I will use parentheses to denote phylogenies, with H=humans, C=chimpanzees, G=gorillas.  For example, (H(CG)) represents a phylogeny where chimps and gorillas are most similar and humans are an outgroup, whereas (G(HC)) represents a phylogeny where humans and chimps are most similar and gorillas are an outgroup.  Finally, note that when we talk about frequencies of predicted phylogenies below, these are the percentages of sequences for which two species are predicted to be more closely related than the third.  These percentages are not the same as actual sequence similarity.  In other words, don’t get confused with the percentages below and the percentage sequence similarities in my earlier post – they’re related, in that the percentages we’re talking about here reflect how often chimps are more similar to gorillas, etc., but they are not the same thing.

All good?  Away we go.

Let’s assume it is 1985, and you and I are in a coffee shop having a congenial scientific discussion about the new-fangled genetic technology that is just being developed (and won’t really come into its own for another 10-20 years or so).  We’ve been over the same old ground many times about your Creation theory and my theory of evolution, including why you distrust dating methods, why you distrust the fossil record, etc.  These are accepted areas of disagreement.  Today (1985), we’re going to use our theories to predict what genetics will reveal about the relationships between humans, chimpanzees and gorillas.

Specifically, we’re interested in novel mutations.  We both believe these are random changes in the genome.  I think they are responsible (along with natural selection and a host of other mechanisms) for the diversity of life on earth, whereas you think they reflect degeneration of God’s Creation since the Fall.  This disagreement in views won’t matter.  Since we only have the back of the envelope, we’re going to simplify mutation as completely random changes in any sequence of DNA that occur at the same rate in each of our three species.  We’re going to assume that the rate at which these random novel mutations accumulate is dependent only upon time, but we’re going to keep time relative (so as to avoid that whole millions vs. thousands of years problem).

We start with a few null hypotheses that neither of us believes.  We believe genetics will reveal some sort of phylogenetic relationship (as opposed to none, or a purely random relationship).  For example, from the evolutionary perspective, if humans, chimps and gorillas were unrelated, or if they diverged from a common ancestor at the exact same time, I might predict that when we look at their genomes, 1/3 of my predicted phylogenies would be (H(CG)), 1/3 would be (C(HG)), and 1/3 would be (G(CH)).  However, the fossil record gives me good reason not to believe the null hypothesis (which doesn’t mean we don’t check it!;).  Similarly, from a Creationist perspective, if humans, chimps and gorillas were created as separate kinds, you might predict the same 1/3 for each phylogeny.  However, you believe chimps and gorillas were created as part of a single “ape” kind, and even if they weren’t, you might predict “common design” to create the appearance of relationships that would refute the null hypothesis.

So I start with my Theory of Evolution prediction, based on what we know of the fossil record in 1985 (the timelines have changed a bit since then).

Predicted initial conditions:  Humans, chimps and gorillas shared a common ancestor as recent as approximately 8 million years ago.  From that LCA (8 mya), the gorillas diverged from the line that would eventually become both humans and chimps.  Humans and chimps themselves diverged about 5 million years ago.

Predicted genetic relationships:  If we assume random, time-based mutations occurring independently in each line, then we can expect that each of the three phylogenies may be produced, depending on the sequence we are looking at.  For example, if a novel mutation in a given sequence occurs independently in the human line, than phylogenies based on that sequence will group chimps and gorillas: (H(CG)).  If the mutation occurs in the gorilla line, the sequence will group humans and chimps (G(CH)).  However, we should be able to roughly estimate the frequencies at which these predicted phylogenies will occur, based on the ancestry pattern found in the fossil record and the relative timeframes for each lineage to mutate.

As in our null hypotheses, if they all diverged from the LCA at the same time, we would predict a 33% occurrence of each "tree".  However, I believe they diverged in the manner and times above.  Chimps and humans shared a lineage for 3 million of the 8 million total years, and this would tend to increase the frequency of (G(HC)) phylogenies by an amount we can estimate.  I therefore predict the following frequency of phylogenies:

(G(HC)) = 39% (from independent mutations in the gorilla line: 0.5*(3/8)+0.33*(5/8)) + 19% (from accumulation of mutations in the shared human-chimp line: 0.5*(3/8) = 58%

(C(HG)) = 21% (from independent mutations in the chimp line: 0.33*(5/8))

(H(CG)) = 21% (from independent mutations in the human line: 0.33*(5/8))

So I predict 58% of the sequences we look at will group humans and chimps as closer to each other than to gorillas, 21% will group humans and gorillas as closer to each other than to chimps, and 21% will group chimps and gorillas as closer to each other than to humans.

You then counter with Creationist Theory.

Initial conditions: the human kind and the ape kind were separately created, and never shared a common ancestor.  Already we’re in trouble, because we have no information on the genome of those two ancestral kinds.  We have reason to suspect they were similar (common design, like Escorts and Tauri in 1985), but we don’t know how similar.  We can’t do the same kind of relative calculations that I did by assuming one common ancestor (which do not require knowledge of its actual genome, just that it was shared).  However, we do know that any differences between these two ancestral kinds should inflate the frequency of (H(CG)) phylogenies predicted.  So right from the initial conditions, you predict that, when we look at a lot of genes to get overall frequencies, the predicted frequency of the relationship (H(CG)) will be greater than 33%.

Creationist Prediction:  We don’t have any information on when (relative to initial Creation – actual years don’t matter for this) chimpanzees and gorillas diverged via “microevolution” (changes within a Created kind).  However, we know it was some time since the Fall.  Without relative time-spans like I had, we can’t do similar estimates like I did, but we can predict that the shared ancestry of chimps and gorillas prior to divergence will increase the frequencies of (H(CG)) even further (as it did for the (G(HC)) phylogenies in my example).

So you end up predicting that more than (far more than?) 33% of sequences we look at will group chimps and gorillas as closer to each other than to humans, less than 33% of sequences will group humans and gorillas as closer to each other than to chimps, and less than 33% of sequences will group humans and chimps as closer to each other than to gorillas.

So, armed with our predictions, we meet back up in a bar 20 years later to discuss the results.  I bring along some papers from the prolific new genetics literature.  Specifically, I show you the following:

Satta, Y., J. Klein, and N. Takahata. 2000. DNA archives and our nearest relative: the trichotomy problem revisited. Mol. Phyl. Evol. 14:259–275.

Chen, F.-C., and W.-H. Li. 2001. Genomic divergence between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68:444–456.

O’hUigin, C., Y. Satta, N. Takahata, and J. Klein. 2002. Contribution of homoplasy and of ancestral polymorphism to the evolution of genes in anthropoid primates. Mol. Biol.
Evol. 19:1501–1513.

Kitano et al. 2004. Human-Specific Amino Acid Changes Found in 103 Protein-Coding Genes. Mol. Biol. Evol.:936-944.

Combined, these studies examined hundreds of sequences for their predicted phylogenies.  Each one found that, on average, approximately 60% of these sequences predicted the (G(HC)) tree (i.e., humans and chimps closer to each other than to gorillas), and the remaining 40% predicted the remaining two trees in roughly equal frequencies (i.e., humans and gorillas closer to each other than to chimps, and chimps and gorillas closer to each other than to humans).  (You can look this up if you don’t believe me Dave – I’m more than halfway here.)

I order you a double scotch (you’re gonna need it!;) as we pull out the faded napkin and look at our predictions.

If you’re still with me, here’s the pop quiz:

What did Creation theory predict?

What did the ToE predict?

What did we actually see?

Date: 2006/05/25 06:14:16, Link 128.100.72.100
Author: incorygible
Quote (Arden Chatfield @ May 25 2006,10:55)
Incorygible, you are possessed of unlimited patience...

Maybe.  But the observation that chimp DNA is more similar to human DNA than it is to gorilla DNA seems to be entirely new to Dave.  Like others, I am very interested in seeing how his brain processes this information, since it has serious ramifications for his "Creator God Hypothesis" that require only the simplest inductive logic and math.

Above, when showing that the ToE accurately predicts observations that are completely opposed to Dave's CGH, I assume only the following (we'll see if I'm too hasty in those assumptions):

(1) Dave understands the concept and relevance of DNA sequence similarity in the most general sense (as he has indicated by his 95% Fiestas and Aerostars "common design" analogy).
(2) Dave accepts that DNA sequences are a cornerstone of genetics, biology, "microevolution", medicine, etc., measured by the type of "real" scientists in labs that he can trust, and he therefore will not ignore or refute reliable and statistically significant sequence data.
(3) Dave believes humans were created as one kind, while chimps and gorillas were originally created as part of a singular "ape" kind.
(4) Dave believes the Creator made these kinds distinct and perfect, and ramdom mutations were not designed (in particular, they were not designed to fool us into believing in common descent).
(5) Dave, as an engineer, can apply simple math and inductive logic.
(6) Dave, again as a successful engineer (not to mention pilot, businessman and upstanding citizen) can approach the problem rationally and logically.

We'll see which of these assumptions doesn't hold. My money is on some combination of 2, 5 and 6.

Date: 2006/05/25 07:22:38, Link 128.100.72.100
Author: incorygible
And there we have it.  A pilot presumably once in charge of finely calibrated instrumentation can't accept the relevance of "one half of one lousy percentage point", despite the fact that it refers to literally millions of data points examined, despite the fact that, as in the original paper, we're really talking about relative differences averaging around 50%, and despite the fact that these results are demonstrably statistically significant (p<<0.001).  In other words, there is far (far!;) less than a one-in-a-thousand chance that this pattern arose by chance.  Dave, for an engineer, you really don't know much about math and numbers.

I really don't know which way this tips the idiot vs. liar scale.

Date: 2006/05/25 07:44:26, Link 128.100.72.100
Author: incorygible
Quote
 You don't have a Toyota Echo.  You have an Expedition if all you are comparing is the genetic sequences.  Remember, Common Design theory says there is only ONE designer.  So you don't have Toyota and Ford making cars ... you just have Ford, so to speak.  Now to make the analogy complete, what creationists are saying is this:  yes, the designs are similar, yes, they use similar physical parts, like alternators, and yes, these parts sometimes break in the same way.  So with humans, we have a Ford Expedition, if you will, which is very similar in its physical body to the other Fords, no one questions this.  But what if all Expeditions were delivered with GPS guidance and On Star and the other Fords were not?  This would be a significant difference from a very small addition of "on-board" hardware.  

This is my theory of the situation we have with humans.  Physical bodies which are very similar to apes, but some addtional "on board" hardware and software and even some "meta-ware" (that we know nothing about) that is not readily detected by comparing sequence differences, which puts humans in a completely different class than apes.  Of course, the analogy is limited, because my theory holds that most of the key differences b/t apes and humans have nothing at all to do with physical "hardware" at all, but mainly consist of immaterial differences, namely that humans have some sort of "spirit" and/or "soul" which apes do not have.  Again, I cannot prove this, and one CANNOT prove it using the scientific tools that you all limit yourselves to, but nevertheless, there is much support for this theory.


So, your prized analogy for your "Common Design Theory" is now:

1. All cars are Fords.  There can be no other designer.
2. They all tend to look similar.
3. We cannot tell anything about the chronological development of Ford models -- or compare one model to another -- by examining the specs, blueprints, design records, factory machinery, etc.
4. The choice of cars is a metaphysical one.

Dave, in case you didn't notice, this analogy has no bearing on automotive or biological reality, and neither does your theory.  Same goes for your language analogy -- mere word salad.

 
Quote
[But the really big news is that ALL THESE ARE JUST TINY EVIDENCES WHICH LEND SUPPORT.  They in no way close the case, and the fact is that Common Design Theory can explain them just as well ... better, in fact, if you take other Ape/Human issues into consideration.


When you get around to reading that really long post, please notice how well your foolishness was anticipated.  I pity those kids, Dave.  I knew your variety "truth" didn't include, you know, actual science or reason or logical consistency, but I had at least hoped -- with an engineer as a mentor -- it would include actual math and an ability to use numbers and words as symbols for reality.

Date: 2006/05/25 08:47:52, Link 128.100.72.100
Author: incorygible
Quote
Then you must be an idiot.  Because I'll wager that you read just this kind of stuff in World Book and National Geographic and at the museum and so on when you were a kid and combined with everything else you learned about evolution, you came to the conclusion that the Bible is a fairy tale and there is no need for a Creator God because look ... Apes and humans are so similar, and look at the fossil record, and look at the age of the earth, and look at evolution in bacteria, and on and on ... who needs to invoke God did it?


In the only from afdave file, Davey equates idiocy with education (and perhaps atheism).  Okay, Dave, I was wrong -- by your Bizarro definitions, you are NOT an idiot.

Quote
I submit to you that if you don't think evolutionists think that antibiotic resistant bacteria lend support to macroevolutionary theory (which some people pretend they don't know what we're talking about with this term), then you are simply lying.  It's plain as day in the popular literature which in turn is based on information from scientists like you.


And I submit to you that you are inadvertantly correct, if only because you don't understand the difference between (nevermind the meaning of) evidence and proof, nor proves and lends support to, and thus are prone to using them interchangeably.  Once in a while, this leads to your comments almost making sense (especially when you fail to grasp that our definition of "macroevolution", if we employ it at all, does not contain the word "information" or "upward" or...).  But by then they don't mean what you think they mean, do they?  He11uva Catch-22.

Dave, how are we supposed to carry on a discussion with you if we can't use words or numbers, since you demonstrate a thoroughly appalling incapacity to understand either?

No wonder your vaunted opponent, jstockwell, starts out very politely but ends up just giving up and calling you an idiot, as Aftershave and Rilke and Faid and Jeannot and myself &c. have done before (check your early threads, big guy).

Date: 2006/05/25 10:13:14, Link 128.100.72.100
Author: incorygible
Quote (Arden Chatfield @ May 25 2006,14:55)
 
Quote

ONE HALF OF ONE LOUSY PERCENTAGE POINT???


Uh oh. Sounds like AFD found the talking point he's gonna use to snowjob the kids at his Sunday school...

We can only hope that the kids are smart enough to (eventually) realize (even if Dave-the-engineer isn't):

1% of 100 = 1
1% of 1,000 = 10
1% of 10,000 = 100
1% of 100,000 = 1,000
1% of 1,000,000 = 10,000
1% of 10,000,000 = 100,000

Furthermore, we can only hope that they are taught well enough by folks other than Dave to actually apply math and logic to figure out the following doesn't make much sense:

100,000 differences between humans and chimps = different kinds (human and ape)
200,000 differences between chimps and gorillas = same kind (ape)
200,000 differences between humans and gorillas = different kinds (human and ape)

Then, if we're really lucky, some might be bright enough to realize that 100,000 differences between humans and chimps + 100,000 SHARED differences between humans and chimps vs. gorillas = a pretty good likelihood of common descent (and a serious problem for human and ape "kinds").

A few will eventually be able to do some stats and figure out exactly what "pretty good likelihood" means.

A few will learn something about quantifying error and uncertainty and realize exactly why "one half of one lousy percentage point" was a silly thing to shriek at a teacher.

Finally, the odd one who gets some real education might begin to see a connection between this, a few hundred thousand more differences in orangutans, monkeys, etc., chromosome fusions, the fossil record, bacterial antibiotic resistance, tens of thousands of scientists, hundreds of thousands of papers...

Dave doesn't just disbelieve all this -- he doesn't understand it -- so he won't be the one to teach them, and it looks pretty bleak.  Personally, I do tend to agree with child "abuse".  But maybe, just maybe, we can hope that one day a child will be the father of the man.  Some kids sniff out bu11sh1t pretty well.

Date: 2006/05/25 10:47:54, Link 128.100.72.100
Author: incorygible
Quote
It seems there are two aspects to ID — the first is science in that the empiracle, objective evidence is on the side of a designer (regardless of whom or what the designer is.)


Wow.  They can't even keep the miracle out of empirical when typing the word.

Date: 2006/05/26 02:13:28, Link 24.42.173.36
Author: incorygible
Quote (Bing @ May 26 2006,07:05)
I fear a great many more will complete their home-schooling and go on to academic careers at Patrick Henry College and then into internships with senators and congressmen.

But it will be short-lived, since I'm pretty sure the aides of senators and congressmen have to be able to identify which "one lousy percentage points" are important.

Date: 2006/05/26 06:25:31, Link 128.100.72.100
Author: incorygible
Quote (Arden Chatfield @ May 26 2006,10:42)
Interesting how GoP so easily wrenched this whole thread away from AFD. Any way we can drop both of them plus Thordaddy into a single thread, slam the door shut, leave them alone to fight it out, and then deal with whichever one's still left standing in a month?

Kinda like watching three squirrels trying to...er...gather...the same nut, ain't it?

Date: 2006/05/26 08:39:40, Link 128.100.72.100
Author: incorygible
Quote
 
Quote
And there we have it.  A pilot presumably once in charge of finely calibrated instrumentation can't accept the relevance of "one half of one lousy percentage point", despite the fact that it refers to literally millions of data points examined, despite the fact that, as in the original paper, we're really talking about relative differences averaging around 50%, and despite the fact that these results are demonstrably statistically significant (p<<0.001).  In other words, there is far (far! less than a one-in-a-thousand chance that this pattern arose by chance.  Dave, for an engineer, you really don't know much about math and numbers. I really don't know which way this tips the idiot vs. liar scale
.
Stick to biology, Incorygible.  You do very well coming up with nice tables, but you are out to lunch in analyzing them.  Also, you people who are slinging around the millions of nucleotides that are identical (or hundreds or thousands, or whatever it is) as if this helps your case, listen to me -- Why do you think everyone talks about the PERCENT difference or similarity instead of the actual numbers of nucleotides?  It's because the actual number of nucleotides don't matter.  The percent matters.  And guess what ... it doesn't mean squat that Humans and Gorillas and Chimps are all within a half a % or so.  That's like saying they look alike.  OK.  SO they look alike in some ways.  I already knew that.  Tell me something I don't know.  It is simply not determinative between Common Descent and Common Design.  We have to look at many other factors if we want to determine between Common Descent and Common Design.  I have gone over this several times.


Dave:

I'd stick to biology if I could, but it turns out my degree is a joint one between the Dept. of Eco/Evo and the Dept. of Math.  Meanwhile...

You can't do math.  You have no idea what numbers are actually important.  You certainly can't place them in anything close to a relevant context.  Please feel free to fly the plane I'm having designed for you -- the landing gear falls off on only one measely percentage point of all touchdowns.  Enjoy.

I look forward to your reply to that long post where I actually took your agrandized "hypothesis", drew inferences that you would be hard-pressed to challenge, and tested them against real independent data.  I did more with your hypothesis than you ever could or will.  Too bad that one testable nugget turned out to be horribly, horribly wrong.  Of course, I'm sure your response will just (yet again) demonstrate that you can't do science, either.

You're an ignorant, arrogant fool, Dave, but it's nice that you make it so plain to see in so many ways.  I'm done pointing it out to you in sublime detail.

But before I go, I'd like to thank you.  Human evolution was always a sidenote in my education.  Oh, I knew the basics and the numbers, but I'd never actually delved into the primary literature.  In that long post, where I conducted the little mathematical exercise to see what evolutionary theory might have predicted prior to genetics, I had absolutely no idea the numbers would turn out so bloody close to the genetic data.  (Oh, I knew they'd be better than yours, but that's not saying much.)  It was quite the thrill (the thrill of actual science, Dave -- you'll NEVER know it) to take my hypothesis and simplistic model, test it blindly (assumptions, simplifications and all) against good, prolific, independent data, and see it supported.  Very fun.  I think it will be a good exercise for my students.

Thanks again, Dave.  Nice known' ya.

At this point, I'll turn this thread over to ghost of paley.  He seems to be itchin' for it.

Date: 2006/05/26 10:12:45, Link 128.100.72.100
Author: incorygible
Hey, I'm still waiting for my finale!  Get in line! (I love that "It's AFDave, sir -- he won't engage!" quote from earlier).

I'm waiting for Dave to show me exactly why a key component of his thread-title hypothesis that I tested for him (and found completely unable to predict observations) can't really be tested, dontcha know.  But I'm sure he'll just rant and rave about how the reality isn't real and statistically significant isn't significant.  Maybe I'll get another ape picture.  (On the plus side, by looking at things in a different way, we're talking about 20 and 33 and 60 percent, so maybe the numbers will mean something to him!;)

Date: 2006/05/26 12:09:41, Link 128.100.72.100
Author: incorygible
Quote (normdoering @ May 26 2006,17:03)
Is GOP a satire? or is he serious -- it's so hard to tell these days.

I'm often almost tempted to call Loki.  Almost.

Date: 2006/05/27 08:23:28, Link 24.42.173.36
Author: incorygible
Quote (afdave @ May 27 2006,07:14)
Incorygible--  

I have analyzed your '1985 Evolutionary Predictions' piece ...

Questions ...

You say you start with the fossil record back in 1985 ...

1) How did you come up with the 8mya and 5mya numbers?  
2) On what basis did you propose that gorillas diverged at 8mya, then chimps and humans diverged at 5mya?

Thanks!

Dave, are you engaging?  This must be some kind of trick!  I wasn't going to reply further, but this is a fair question.  Unfortunately, I can only give you a general answer at the moment.

To get my estimates from the fossil record (and I should have been more accurate and said anything "non-genetic"), I initially searched ISI Web of Science abstracts from 1976-1985.  Unfortunately, I couldn't immediately find the information I was looking for in the abstracts themselves with a few quick search strings.  Online publication access doesn't generally go back that far (so I couldn't read the full papers I wanted to read), and you'll forgive me if I wasn't about to take any more time away from my actual work to trek across campus to the stacks.  Luckily, our lab library has a dusty shelf of old texts on human evolution (everything from Louis Leaky to Desmond Morris).  I picked an old physical anthropology textbook off the shelf (looked to be for an old undergrad course).  If I recall correctly, it was a 2nd edition published in 1987, which I figured was close enough.  I know the simplified numbers I used were the midpoints of ranges (4-6 mya and 5-10 mya, IIRC).  However, for the exact bibliographic information, you'll have to wait until I'm actually back in the lab (middle of next week) and get a chance to look it up again.  Okay?

In the meantime, maybe you could start on explaining why the Creation Theory prediction was QUALITATIVELY wrong?

Thanks.

Edit: Also, Dave, please keep in mind that I know those numbers have changed (and say so in my original post).  For example, Dawkins (2004) gives 6 mya for chimps and 7 mya for gorillas, which would have made the numbers match up less well.  What actually matters isn't the mya, but the time shared vs. time separate.  For example, 3/8 shared (HC) that I used in our back-of-the-envelope calculation, vs. 1/7 shared (HC) that I would use if I started from Dawkins.  So the value of the numbers I arrived at, while remarkably close to the genetic data, is probably just a coincidence, and could easily have been different (and I am well aware of this).  So fun as it was to think that, if I had that textbook in '85 and had made my prediction, I would have been bang-on, this isn't really the point (kind of a fluke).  The point is that evolutionary theory points us in the right direction (and gets us pretty close), and creation theory points us in the wrong direction.  I'd be grateful if you could address that.  Thanks.

Date: 2006/05/27 09:21:48, Link 24.42.173.36
Author: incorygible
Quote (afdave @ May 27 2006,06:44)
Your guy is saying <1% cost = no cost.  Come on.

Um...Dave...given you prior comments on the ape thread, exactly how are you determining when "<1%" is important and when it is not?

Date: 2006/05/28 06:33:05, Link 24.42.173.36
Author: incorygible
Dave,

You've had to days to answer a simple, pointed question (about the inability of your hypothesis to predict observed reality) and didn't bother.  I can only think it has something to do with this...

Quote
My goals will be realized easier if he does not respond.


So please, go ahead with your efforts to realize those 'goals' -- you seem to have gone on with your rant anyway, and I can't be bothered to make your job any more difficult by asking questions and actually expecting rational support for your 'argument'.

You know, almost every day on my way into work, I pass a crazy homeless man who always calls out to me that he "is a hostage of terrorists".  Bought him a coffee once, and had an hour-long discussion.  The similarity between his insane word salad and yours is striking -- at times, it almost seems to indicate a somewhat capable mind behind it, just for a moment then it's gone.  Our conversation was interesting at the time, but we've gone back to our original ranter/ranted-at daily ritual.  His argument about the terrorists wasn't about to get me to dig in my own neck for the chip (as he had), and your ridiculous argument about writing (why writing? why not speech? why not agriculture? why not...) isn't about to get me to sing Amazing Grace.

Continue with your regularly scheduled programming, Dave.

Date: 2006/05/28 14:59:13, Link 24.42.173.36
Author: incorygible
Quote (afdave @ May 28 2006,19:11)
Incorygible ...      
Quote
You've had to days to answer a simple, pointed question (about the inability of your hypothesis to predict observed reality) and didn't bother.  I can only think it has something to do with this...
No ... I'm quite happy to finish this discussion, but the ball is in your court.  You were going to tell me on what basis you made the 8mya and 5mya assumptions.  

You said it was a fair question and you would get right back to me as soon as you could.  If you do not, I will make some assumptions about your statements.

As for the rest of you ... I'll answer Monday morning.

Make whatever assumptions you want, Davey Boy.  You do anyway, and your obfuscation marks you as a lying coward.  My question about your hypothesis being qualitatively wrong is absolutely independent of any bibiliographic details you demand from my own, and you could answer it now if you had an ounce of integrity.  Unless your hypothesis is nothing more than demanding infinite degrees of "pathetic detail" from mine?  That's not the case, is it Davey?  If you stupidly think the simple statement, "I have analyzed your piece" puts the ball in my court, then let me tell you, "I have analyzed the Bible and the claims of YECs".  There.  I'm done with your dishonest, dissembling BS.  Others can poke and prod you bemusedly when it comes to your hilarious age of the earth 'arguments'.

(Note for everybody else: when I get the chance, I will post the citation for exactly what physical anthro. text I used, in case you were curious.  But I resolutely refuse to respond directly to afdave's crap ever again. "Uneducable" is right, and Arden, I've finally esxausted my apparently "unlimited" well of patience.)

Date: 2006/05/29 03:16:08, Link 128.100.72.100
Author: incorygible
FYI (the source of my info in the little prediction exercise):

Lewin, R. 1984. Human Evolution: an illustrated introduction. Freeman, New York.

Stein, P.L. and Rowe, B.M. 1989. Physical Anthropology (4th ed.). McGraw-Hill , New York.

The Lewin text provides some good estimates of time bp (including the 5-10 and 4-6 that I ended up using), whereas Stein and Rowe further review fossil finds, comparative morphology, early protein sequence data, etc., and provide a series of (sometimes conflicting and often uncertain) dates (e.g., compare chapters 13 and 14), including those above).  Interestingly, back then, the timeline with gorillas splitting off earlier was the new kid on the block in the marketplace of ideas, though I get the feeling it had more traction in the primary literature than in undergrad texts.  Stein and Rowe still seemed to settle on placing gorillas in Panidae with chimps, but highlighted this was questionable.  Lewin's second edition (1989) is updated to less equivocally show the gorillas branching off first.

In framing my prediction, I ran with this "new" perspective (I could be accused of employing the benefit of hindsight, to be sure, but it beats wilfull blindness).  I suppose I could have gone with the old timeline (or the general uncertainty at the time), and run into the same problem as Dave's CGH (i.e., predicting more similarity between gorillas and chimps, or no definitive prediction at all).  Of course, in our little scenario, I would have revised that theory when the data came in (just as the field actually did -- hello, science!;), while the baraminology sect would continue to hide, deny and obfuscate their little "theory" right up until now.

Anyhow, as only one key participant in this discussion seems to have missed (thereby exhausting my patience), the key point relevant to this thread is NOT that evolutionary science at the time generated the right prediction (though it very well might have, and it was fun to try) -- it could have been wrong, but eventually revised to accomodate the new data.  The point, which you all know already, and which remains completely unaddressed by its proponent, is that a definitive prediction of the "CGH" is dead wrong.

I'll let others show why what is perhaps the most important prediction (i.e., a 6,000-year-old universe) is similarly out to lunch.

Date: 2006/05/29 04:00:02, Link 128.100.72.100
Author: incorygible
One wonders (even if one doesn't ask directly  :p  ) why these early Advanced Civilizations, reading and writing their stone tablets so soon after Creation and Divine Providence, would be so disparate in their thoughts as to the source of their creation and near-perfect knowledge.  Further, one might wonder how we in the present age -- fallen, sinful, stupid souls that we are -- would pick one stone tablet over another to find our Maker again. We really might wonder why we should instead find the 'truth' in a book written 4,000 years later...  Maybe it's a practical choice?  Too few virgins to sacrifice these days?

Date: 2006/05/29 04:48:22, Link 128.100.72.100
Author: incorygible
So...much...fodder...for...ridicule.  Must...resist.

But the rest of you enjoy it!

Instead, I must stubbornly and shortsightedly finish a manuscript for submission to Nature later today (citing years of published "wild assumptions," and making a few more based on a decade-long experiment) instead of doing "real science" with a crazy ex-pilot fundie on the internet.

At least I've confirmed that special pleading is, indeed, the most frustrating logical fallacy, and the one I most detest. I've never seen so much of it at one time, and now I'll remember not engage it in the future.

Date: 2006/05/30 06:40:20, Link 128.100.72.100
Author: incorygible
Quote (normdoering @ May 30 2006,11:26)
Quote (ericmurphy @ May 30 2006,11:18)
Has he persuaded anyone yet?

Yes, he has persuaded me that he is far more brain damaged than I thought was humanly possible.

He has persuaded me that he can persist in his delusions in spite of all the evidence against them.

He has persuaded me that he lives in his own mental fundy world and not in reality.

Ditto.

And I'd add the persuasive lesson that the tangled webs of lying, self-deception, delusion, ignorance, arrogance, psychosis, and wilfull blindness are more irreducibly complex than I ever thought possible for people outside a padded cell.

I used to get a kick out of Dave's morning "summaries".  It was like watching a running TV series (e.g., Prison Break or 24) where the "previously on" intro montage had absolutely nothing to do with what you had seen in prior weeks.  You thought you watched Michael et al. escape the prison and Bauer rescue whatever family member had been kidnapped by terrorists, only to find a "summary" the following week contains something only loosely recognizable as the plot, the characters look different, the gang is still twiddling their thumbs in jail, and Jack didn't even have a daughter (where'd you get that idea?).  Entertaining for a while, but soon becomes repetitive and stale, and the rush of complete bewilderment is numbed.  Like watching Cronenberg, eventually unreality doesn't surprise and prompts only a yawn.  

My only entertainment from Dave's little rant today was the ironic coincidence of Coldplay on the stereo as I read it:

Are you stuck at squuuaaarreee ooonnne?

Date: 2006/06/02 11:39:48, Link 128.100.72.100
Author: incorygible
Quote (ericmurphy @ June 02 2006,14:08)
...demonstrate that the universe is not 6,000 years old, but in fact is two million orders of magnitude older than that?

I know Dave claims we never correct each other, but you meant two million TIMES, right?  :p

That, or since there's only room for God "outside time and space" in the past (and not necessarily the future), God hasn't been able to do much for a REALLY, REALLY long time!

Date: 2006/06/08 03:12:09, Link 24.42.173.36
Author: incorygible
Quote (afdave @ June 08 2006,07:40)
Let me translate Humphrey's 'Sledge Hammer Blows' for you ...
BLOW #1:  How is Helium going to squeeze through 1 angstrom spaces? (size of a hydrogen atom)

Er, Dave, you might want to, you know, actually look up the atomic radius of the helium atom. You're in for a big surprise.

:D

Date: 2006/06/08 05:18:21, Link 128.100.72.100
Author: incorygible
For me, the best part is watching Dave try to argue similarity and ancestry re: French/Spanish/Portuguese using the same type of logic that he vehemently denies when it comes to chimps/humans/gorillas.  Look at what he tried with the word comparisons, and compare it to the genetic data he was presented for GULO and other sequences.  Nevermind that he is horribly, horribly wrong when it comes to the actual 'phylogenetic' data in both cases (i.e., the evidence supports more recent human-chimp co-ancestry than Dave can accept, and more distant French-Spanish-Portuguese co-ancestry than Dave can accept).  The point is that the very nature of the logic he (poorly) refutes in one case he (poorly) applies in the other.

Dave, how can you not claim that humans are a mix of gorillas and chimps? After all, we've already showed you the 'word' comparisons.  We can show you that there was plenty of opportunity for chimp influence on humans back on the savannah.  And you've already been linked to a very recent Nature paper that shows exactly the kind of influence you're looking for, though the thought of it probably horrifies (or is it excites?) something deep in that fundie ganglion of yours.

Date: 2006/06/08 07:10:28, Link 128.100.72.100
Author: incorygible
Quote (incorygible @ June 08 2006,08:12)
Quote (afdave @ June 08 2006,07:40)
Let me translate Humphrey's 'Sledge Hammer Blows' for you ...
BLOW #1:  How is Helium going to squeeze through 1 angstrom spaces? (size of a hydrogen atom)

Er, Dave, you might want to, you know, actually look up the atomic radius of the helium atom. You're in for a big surprise.

:D

Dave, don't you feel like defending your "sledge hammer blow"?

After all, as usual, this killer "blow" glanced off ineffectually and bounced back to hit you in the face.  I'll tell you why, in order of increasing importance:

1. It contains an erroneous definition. 1 Angstrom is strictly defined as 10E-10 m, or 100 pm. It is not the "size of a hydrogen atom," unless you play fast and loose with the manner in which you apply measurements of atomic radius (is this based on hydrogen's Bohr radius?). When talking about atomic radii, 1 Angstrom is most accurately the "size" of the hydrogen MOLECULE (that's two hydrogen atoms, based on covalent radii, Dave).

2. It is simplified to the point of irrelevance.  What do you (and your source) mean by "size", Dave?  Atoms aren't billiard balls.  They're squashable.  Are you measuring Bohr radius?  Covalent radius?  Van der Waals radius?  Do you know which one? Do you know which applies when?

3. It is pure speculative handwaving.  Your source, whom you summarize, states:

Quote
Those factors would mean that the interface widths between minerals would be microscopic, perhaps only an Angstrom (the diameter of a hydrogen atom) or so.


So, basically, dry rock and lots of pressure amounts to small interface widths.  How small?  Maybe about an angstrom (or so!;).  Where are the calculations to show this? Nowhere to be found.  We're supposed to take your word that the helium had to be squeezed through spaces 1 angstrom or less, and that this condition was constant through time?  Better back that up.  On second thought, don't bother, because see below.

4. Even if, despite 1-3, your argument is essentially correct, it doesn't help you. Go look at the size of a helium atom, Dave (hint: its effective covalent radius is 32 pm).  Explore covalent radii, van der Waals radii, noble gases, pressure, valences -- aw he11, Dave, take a gander at the entire field of chemistry.  Then come back and try to tell me that a helium atom cannot fit through a space that is perhaps "1 angstrom or so".

EDIT: I see that, as I was composing this in my off moments, Davey acknowledged Sledge Hammer Blow #1 whiffed completely.  But we're supposed to worry about the other ones.  They hurt -- really!

Date: 2006/06/08 07:47:55, Link 128.100.72.100
Author: incorygible
Dave, you've got some interesting ideas as to where the burden of proof actually lies.  You contend the RATE result is enough to overturn centuries of established science and millions upon millions of other data points.  We contend that the RATE result, assuming it is accurate, is an outlier -- a single disconcordant aberration based on conditions we haven't nailed down (but have plenty of potential explanations), lost in the sea of millions upon millions of concordant findings.

To add another Top Gun reference, you've got to fly better and cleaner than the other guy.

Now, you've already blown your chances at benefit of the doubt by being so obviously and laughably wrong so many times before (most recently in "sledgehammer blow #1", for which your trusted source was misleading enough in his handwaving to send you, an obviously intelligent guy, down the wrong path).

Therefore, in response to your other blows, the following is perfectly valid:

Quote
BLOW #2:  Show that basalt conduits exist
BLOW #3:  Helium concentration in basalts is 40 times too small
BLOW #4:  If the extraneous He somehow got there, how would it stay with the considerably higher temps?


(2) Show that they don't.
(3) Perhaps too small at present. Show that it was always so.
(4) That would depend on how it got there and what (and when) those temperatures actually were. Give me those and I'll tell you.

As it stands, you're just retreating into the few gaps that you don't get immediately squashed in, demanding data for a sensible hypothesis to explain a single unexpected result, while simultaneously refusing to provide any evidence for your own esoteric contention that the outlier is right and the millions of other data points are wrong.  Put up or shut up, Dave.  You better have tens of thousands of data points we (or the experts) can't immediately explain, and which can best be explained by your contention that the Earth is a few thousand years old.  You're off to a very poor start.

Date: 2006/06/08 12:04:17, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 08 2006,15:24)
Faid ...  
Quote
What do you have to say now that you know that all fusions are not harmful, dave?
Fusions?  You haven't begun to convince me that they are not harmful.

Chris Hyland says they are.  You say they are not.  Chris seems more honest.

Hmmm ... we'll see.  I need more data.

Exactly what do you mean by harmful, Dave?

Chromosomal misallignment (of which fusion is only one possibility) occurs all the time during meiosis (gamete (sperm/egg) production).  Consider it a cost of doing business.  Is it harmful?  Why, yes, almost all the time -- IF YOU'RE A SPERM CELL (and it really doesn't matter if you're a human, mouse, fish, ant or wheat sperm cell).  So if by "harmful" you mean dead sperm, then you are correct, but rather irrelevant.  We may as well talk about bicycle seats, smoking, birth control and a number of sometimes pleasurable activities that result in a whole lotta dead sperm cells.

But this is normally fixed well before you blow your wad, Dave.  If we're talking about humans carried to term, then no, most of the remaining chromosome fusions are relatively harmless (i.e., the really harmful ones are normally weeded out well before the zygote formed).  Faid has given you the links on Robertsonian translocations, which you obviously haven't read.  These are fusions occurring in chromosomes 13-15 and 21-22.  They are, by far, the most common human chromosome fusion we see beyond the gametic level, occurring in about one in a thousand individuals.  And they are usually harmless.  Sometimes (but not always) they reduce male fertility, but that's about it.  You or someone you know probably has this type of fusion without knowing it (unless they've been to a fertility specialist).

Why? Because the centromeres (where chromosomes tend to fuse) of chromosomes 13-15 and 21-22 are located at the very tips. You can lose those tips without losing much.  Lose an entire 'arm' of a chromosome with a centromere closer to the middle and you lose a lot of genetic material, meaning you're probably one very dead sperm.

But you should have known all this already.  You've been told many times.  Chris says MOST chromosome fusions are harmful.  At the gametic level, they are, and there are also some particularly nasty ones that can have ugly consequences for an actual human being (but these are relatively rare).  At the organismal level (which requires there to be an organism in the first place), the remaining fusions are generally harmless.

Here's another paper you won't read:

Morel F, Douet-Guilbert N, Le Bris MJ, Herry A, Amice V, Amice J, De Braekeleer M. 2004. Meiotic segregation of translocations during male gametogenesis. INTERNATIONAL JOURNAL OF ANDROLOGY 27 (4): 200-212.

Abstract

Balanced reciprocal and Robertsonian translocations are the most common structural chromosomal abnormalities in humans. Generally, they are without consequence for the carrier, but for various degrees of oligoasthenoteratozoospermia in men. As these carriers can produce a significant percentage of gametes with an unbalanced combination of the parental rearrangement, there is a more or less significant risk, according to cases, of chromosomal imbalances for their offspring. Therefore, techniques were developed to study the meiotic segregation of these translocations in males. Direct investigation of human sperm chromosomes became possible by karyotyping spermatozoa after penetration of zona-free hamster oocytes and, more recently, using fluorescent in situ hybridization (FISH). This paper reviews the results obtained using these techniques in Robertsonian and reciprocal translocations. The studies on spermatozoa from translocation carriers help the comprehension of the mechanisms of the meiotic segregation. They should be integrated in the genetic exploration of the infertile men, in order to give them a personalized risk assessment of unbalanced spermatozoa, specially as a correlation was found recently between the percentage of abnormal spermatozoa and that of abnormal embryos.

Date: 2006/06/09 07:34:57, Link 128.100.72.100
Author: incorygible
Afdave,
 
Quote
 
Quote
oligoasthenoteratozoospermia

Now there's a cool word!


Agreed.  It took a little memory work to parse.

 
Quote
Faid ... notice how Incorygible goes to the trouble of actually explaining things in his own words, rather than sending me off to 5 different links. Take notes from him ... he is good. (not just being a smart aleck here)


Er...I do know this stuff, and I didn't ask any questions about it, but I read Faid's links as a courtesy to following Faid's discussion with you.  Why didn't you read them, as opposed to repeatedly asking an answered question?  Everything I said (and much more) could be read at those earlier links in a matter of minutes, and doing so is the least you can do in courteous, honest, civil discourse, Dave.

 
Quote
So, (now that I have a very detailed answer on the subject from someone who appears to be knowledgable) I guess we could say that chromosome fusion events could be considered to be a sort of mistake?  Sort of like the deletions and substitutions of nucleotides we explored a while back? And like those, these are usually not harmful (at least that we know of), but sometimes they are?  Like Downs Syndrome?

Is this an accurate summary?


To anyone else, I would likely reply, yes, that is a mostly accurate summary.  However, with you, Dave, I anticipate tiresome semantic games with the word "mistake".  I hope I'm wrong, but just so we're on the same page:

Yes, they are sort of "mistakes", if by mistake you mean a difference between the 'original' and the 'copy'.  However, if you want to heap on the negative connotations inherent in the word "mistake", you will have to be very specific about the context.  To be sure, large differences between original and copy (e.g., large deletions, most fusions, frameshifts, etc.) are usually mistakes in almost any sense of the word (less perhaps the awareness and control the word implies).  These tend to result in a highly incomplete or erroneous genetic complement, which not surprisingly has high potential to be completely unviable (i.e., the cell receiving that complement 'dies' quick).  However, some fusions (e.g., those involving the acrocentric chromosomes invovled in RobTs), most substitutions (especially if we're talking single-base), small deletions (if not frameshifting), and plenty of other mismatches between the original and the copy, while 'mistakes' by the first definition, do not match the second (i.e., they're more like 'typos';).  This isn't black-and-white; it's a continuum.  At one end we have, say, a single base-pair substitution that changes absoultely nothing in the gene-product; the only way to identify this 'mistake' is to sequence the genome and check the As, Ts, Cs and Gs.  Otherwise, it's completely innocuous.  At the other end of the spectrum we have, say, large deletions, unballanced translocations, monosymy (where an individual only receives one copy of a chromosome), etc., which leave a cell unable to perfrom one or more vital functions (making and maintaing a cell membrane, converting food to energy, etc.).  Such cells become goo almost as soon as they are made, and the 'mistake' disappears.  Everything else is somewhere in between.  And while a great deal of newly-minted cells get to experience that ugly right side of the spectrum (maybe even the majority of would-be cells?), if you're still around to ask about it, the thousands and thousands of 'mistakes' in your DNA are closer to the left end of this gradient.  Thus, 'mistakes' like the fusion of chromosome 2, deletion in GULO, and RobTs are normally quite viable, which is why we can observe them.  Things like Down Syndrome (which can result from a translocation, but is much more commonly caused by trisomy 21, where an individual receives three fully functioning copies of chromosome 21 and this causes problems) are in that uncomfortable middle ground, where the result is viable at the cellular level, but causes a lot of grief at the organismal level.

There is a lot of gray area for differences between the original and the copy.  Where do you put slightly more abnormal sperm?  It would depend upon how much trouble you're having conceiving, I guess, and the myriad other genetic and environmental factors affecting your fertility.  A requirement for Vitamin C in your diet?  It would depend on whether you have a glass of OJ every morning or are stuck at sea before the cause of scurvy was disovered.  Fused chromosome 2?  No bloody idea (perhaps this was an early homonid RobT that was preserved).

And never forget, once in a while (not often, but sometimes), the 'mistake' in the copy is even better than the original.  Welcome to biology -- it's compicated, messy, and very fun.  When it comes to 'mistakes', we've all got 'em, and some are worse (and once in a while better) than others.

EDIT: In light of Dave's discussion with ericmurphy, I will point out that he is at least thinking logically when it comes to chromosome 2.  If chromosome fusion was similar to a current RobT, and it did reduce fertility (as is sometimes the case), we might expect it to be less likely to persist in the human lineage than the unfused pair.  But Dave, less likely is not unlikely, and there are plenty of things that could easily account for this.  First, it could have been a completely benign fusion (not uncommon in RobTs).  Second, the individual who received it might have inbred, and individuals with RobTs have HIGHER fertility when mating with others having the same RobTs.  Third, it could be a result of drift, founder effects, and other small population effects (i.e., the effect was negative, but the original unfused version disappeared while the fused version remained due to environmental chance).  Fourth, it could have been caused by some other change in the DNA that made it more likely to happen (look at Down Syndrome for factors that make trisomy 21 more likely, for example).  Fifth, while unlikely, it could have actually been beneficial in some other way.  That's off the top of my head.

Date: 2006/06/09 07:53:30, Link 128.100.72.100
Author: incorygible
Oh and Dave, don't forget...

Because I did.  In my discussion above, I used the terms 'original' and 'copy', but I forgot that even a normal intuitive reading, to say nothing of your...er...perspective, would naturally lead you to believe that the original was superior to the copy, even when discussing mistakes that are nothing more than small typos.  Please keep in mind that the 'originals' in this case have plenty of typos themselves -- enough to overwhelm the significance of new typos.  What's more, a typo on top of a typo can restore meaning to the word.  Keep that in mind.

Thanks..

Date: 2006/06/12 03:05:18, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 10 2006,09:53)
After much effort and conflicting information, I found out that Gorillas, Chimps and Humans have about 98% genetic similarity, they share a common defect, and that evolutionists get very excited about Humans being a hair closer to gorillas than Gorillas are to chimps.  1/2% closer.  Pretty exciting stuff, to be sure!  Never mind all those HUGE differences ... we're 98% similar!  Let's give 'em minority status and voting rights!  Yippeee!  There was some intriguing info about chromosomes, but again, nothing which requires common ancestry.

Dave, I love how you keep returning to the "1/2% closer" (even if you can't keep track of what is closer to what). Gives me a chuckle every time. I would have assumed they taught engineers how to appropriately apply maths to the real world, but you know what they say about assuming anything.  Speaking of which...

AFDave is standing in a barn on a hot summer day. Also inside the barn are a donkey and a fresh pile of road apples. Dave's task is to empirically determine the difference (if any) between himself and these two other items. Our trusty engineer pulls out his WWJM-brand (What Would Jesus Measure) tape and gets to work.

The first thing he does is measure the dimensions of the barn and calculate its volume. He then measures himself, the donkey and the pile, and calculates their respective volumes relative to that of the barn:

Vdonkey/Vbarn = 2%
Vdave/Vbarn = 1%
Vpile/Vbarn = 0.5% (it's a big pile)

Based on these results, and given the overwhelming volume of empty hot air, Dave is now satisfied that there is no convincing evidence of any difference between himself, an ass, and a steaming pile of horsesh1t. Unfortunately, his satisfaction is shortlived, and turns to palpable fear when a small side door opens and Thordaddy creeps into the stables...

Date: 2006/06/12 04:17:03, Link 128.100.72.100
Author: incorygible
Quote (Faid @ June 12 2006,09:03)
I wouldn't worry. Thordaddy probably just wants to propose to the donkey...

But if even AFDave the Engineer can't spot the 1% difference between himself and the donkey, and if Thor feels entitled by the evil homosexual agenda to claim more than one bride...

Date: 2006/06/12 04:41:29, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 12 2006,09:21)
Jeannot...I'll take you on in 'maths' as you call it any day ... Here's the relevant 'maths' - Similarity %: HC- 98.89, HG-98.52, CG-98.36 (courtesy of Incorygible) You are using the difference HC-CG as the denominator in your formula and HC-HG as your numerator, giving something like .2/.5=40%, which is completely irrelevant and highly misleading.  For an organism to be '40% closer' to humans than some other organism, an honest comparison would be something like this: HX=80% and HY=40%.  Now you can say 'X' is 40% closer to 'H' than 'Y' because the proper denominator is used, that is ... 100%.  You are essentially 'magnifying the differences with an electron microscope' by using the small denominator.  Common sense should have told you that a chimp is not 40% closer to a human that a gorilla.  What is fair to say is that chimps are slightly (1/2% or so) closer to humans than gorillas.  But this statement does nothing for our attempt to favor Common Descent over Common Design because it sis so small.  As for my logic about Bush, you are correct:  Bush is only 2% closer to you than to a chimp, which is no problem for Creationists (and Democrats :-)  ).  Their gross morphologies are  similar in many ways, so why should we not expect that their genes are similar?

Dave, you are DEAD WRONG in your mathematical reasoning here, as my parable illustrated in advance of your attempt at explaining yourself.  The degree of genetic distance between humans-chimps and chimps-gorillas IS calculated exactly as Jeannot suggested.  Note that to provide the table you keep citing as you wanted it, I actually had to convert the published % difference to % similarity.  We have argued that gorillas have almost twice as many differences (when comparing their DNA to ours) as chimps, and the same could be said from the perspective of the chimp DNA.  Whether or not this is 'magnifying the differences with an electron microscope' is NOT a question of percentages and how they are used, but a question of statistics (number of samples, variance, etc.), for which you have already been provided the p-value.

Date: 2006/06/12 05:05:49, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 12 2006,09:21)
I will say to Incorygible that I am still waiting to hear why you think it is valid to say that gorillas diverged at 8mya and chimps and humans diverged at 5mya.  I know you read it in a textbook, but my questions was, 'Why did the textbook think this is valid?  What is the basis for saying this?'

That would be as easy as reading my answers and checking the references, wouldn't it?  Lewin (1989; Chapter 3: Historical Views) gives a detailed history of scientific thought on human-ape relationships between the 1890s and the present.  He covers fossil hominid discoveries, early protein comparisons, etc., and the dates they suggested for branching in the ape lineage.  This includes the earlier and longer-held notion that chimps were closer to gorillas, and why this was overturned.  If you want even more details on some of this evidence, I provided you with a good reference (Stein and Rowe 1989) and relevant chapters.

Now, rather than implying that I don't answer your questions because I'm not spoonfeeding you dozens of pages of text, how about answering the one big question I posed to you many times regarding why your "Creator God Hypothesis" doesn't match the data?  This has nothing to do with what evoltuionary theory says and why.  Whether you view the "1%" as important or not, it is clear that the differences between us and chimps are smaller than your proposed "microevolutionary" variation within the "ape kind" (chimps and gorillas, plus we haven't even touched orangutans, which you would group in the ape kind, but have been known to be a significantly different outgroup since the 1920s).  Why do your Creator's code and the fossils of His Flood so strongly suggest to us that humans are just another ape, contrary to His book?

Date: 2006/06/12 05:30:55, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 12 2006,10:05)
Note to self:  Add Incorygible to the list of trolls with Rilke and Aftershave.  He can't even insult me in a mathematically convincing way.

Fine, Incory, take the differences if you want to instead of the similarities.  That takes the incredible mathematical feat of subtracting the values from 1.

I can hold your hand and walk you through it if you like ...

Similarity %: HC- 98.89, HG-98.52, CG-98.36

translates to  ...

Difference %: HC-1.11, HG-1.48, CG-1.64  OK?  Are you with me?

Now, everything I told Jeannot applies to this as well.  

It is NOT meaningful to divide (CG-HG)/(CG-HC) or (HG-HC)/(CG-HC).  

If we are trying to compare similarities or difference, the meaningful quotient is (HG-HC)/1 (or 100 if using %).  This comes out to my 1/2% (less actually) which I keep trying to hammer into your increasingly closed mind.

Only a lunatic or a blind man would say that chimps are 40% (or whatever your number is) closer to humans than gorillas are.

Thank you for illustrating to all of Aftershave's Lurkers just how blind you really are (I'll give you the benefit of the doubt that you are not a lunatic), and for demonstrating that you don't even know how to insult me convincingly.

Dave, your innumeracy is striking, and to use it as an excuse to label me a troll is laughable.  Mathematically, logically, whatever, it is just as valid to quantify the relative degree of difference between chimps-humans and chimps-gorillas as 40% (and in fact clarifies and emphasizes the point) as it is to quantify the degree of similarity 98-99%.  Or we could talk about absolute numbers, and the millions of points of difference vs. the hundreds of millions of points of similarity.  Same thing, presented a different way.  All valid.

When talking about the the choice of numerator and denominator when discussing percentages, one has to examine the context (e.g., % difference, % similarity, absolute or relative comparison, etc.).  Yes, any of these can be used to rhetorical advantage (watch a few commercials citing percentage improvements, for example).  However, while we evil evolutionists have simply used the relative % difference to try to get it through your thick skull that the difference is meaningful, you have disingenuously tried to demonstrate that "1%" is meaningless on rhetoric alone.  Hmm...I wonder if there is a way to determine whether a particular value is meaningful or not, independent of rhetoric and "common sense"?  Oooh...looky here...we have an entire branch of mathematics devoted to exactly that!  I wonder what it says?

AFDave would have you believe that the 1% is meaningless.  Why?  For his "Creator God Hypothesis" to be valid, it HAS TO be meaningless.  He has to convince you that we lack the resolving power to measure this difference accurately.  To do that, he has to make you buy into the "oooh...1%...I'm so impressed" crap.  He has to make you ignore the statistics that support our estimated relative differences as meaningful (i.e., not due to chance alone) 9,999 out of 10,000 times.  He has to label anyone who points out the error in his rhetoric as a troll.  Does it work?

While you're at it, Dave, why not demonstrate:

There is no meaningful difference in measured average temperatures between your location in California and mine in Canada. After all, the proper denominator would be the distance from absolute zero, right?

There is no meaningful difference in the DNA of individual humans.  Forensic applications are meaningless.

There is no meaningful difference in flight distance (or vector) between Los Angeles and London and Los Angeles and Paris.

There is no way for us to perceive differences in the height of various city skyscrapers.

Should I go on?

Your ego's writing cheques your a$$ can't cash, Davy-boy.

Date: 2006/06/12 05:49:18, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 12 2006,10:36)
I want this 'Human-Chimp-Gorilla Sequence Difference' thing to be crystal clear ...

Some of the 'geneticists' here have taken my 'measley 1/2% difference' argument and said basically 'Davey, davey ... doesn't your small, 'maths' challenged mind understand that 1/2% of 50 gazillion nucleotides equates to a very big number?'  

To which I reply ...

'Of course.  But 1/2% of ANYTHING is still 1/2%'

and 1/2% is the relevant number here for what we are trying to say.  Of course if we are talking about NUMBERS OF SUBSTITUTIONS, then sure, chimps may have 40% more or whatever the number is.  But all this  calculation does is COMPARE SUBSTITUTIONS, not give an honest picture of how much more similar to humans chimps are vs. gorillas.

It's amazing to me that I'm having to debate this concept with guys who call themselves scientists.  This is utterly ridiculous.  And if that weren't ludicrous enough, Jeannot has the gall to attack my math skills??!!  And Incory comes with an asinine joke about a donkey in a barn??!!

Wow!  Just wow!

Keep digging, Dave.  If you really think "1/2 a percent" is the relevant number (though it is a perfectly valid number and you're having fun with its rhetorical value), that it somehow reduces the "gazillion" data points to triviality, and that the genetic data are therefore "meaningless" (p<0.001 says otherwise), then many of your kids WILL be able to apply math much better than you do, despite your best efforts.  You might be able to hoodwink the rest with your silly song and dance (unfortunately, it's even easier to grow up innumerate than it is to grow up illiterate).  But Davy, your "math skills" are VERY easily attacked, and you should be embarassed instead of pompous.  Thanks for the laughs, though.  You're right -- all of us silly scientists can't do math and have no practice in identifying a legitimate phenomenon from numerical noise.

Date: 2006/06/12 05:58:48, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 12 2006,10:46)

Quote
It IS meaningless used in this context and you would know it if you were being honest.


:D  Really now?  So either: (a) you're going to show me the results of the relevant statistical test that demonstrates these results as "meaningless" (as well as explaining why the tests performed by the authors which demonstrated the results were highly significant are erroneous or invalid); (b) you're going to add statistics to geology, cosmology, biology, etc., on the list of evil fields of knowledge that can't be trusted; or © you're just going to go on claiming honesty/dishonesty and meaningful/meaningless are what you say they are because you know better.  Go for it, Dave.

Quote
Note to self:  Add Incorygible to the list of trolls with Rilke and Aftershave.


Quote
As for trolls, I don't easily label people as trolls.


:D

Quote
Get off this branch you are on quickly and I will leave you alone.  Stay on it and I will saw it off and use your ignorant claims as just one more proof to Aftershave's precious lurkers that Evos have lost their marbles.


I'm shaking in my boots, Dave. Put up or shut up.  Saw off those stats.  I dare ya.  Leave the rhetoric behind, and demonstrate MATHEMATICALLY that 1/2% is meaningless in this case.

Date: 2006/06/12 06:58:33, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 12 2006,11:42)
Incorygible...      
Quote
Leave the rhetoric behind, and demonstrate MATHEMATICALLY that 1/2% is meaningless in this case.
Already did, but you missed it.

But PuckSR caught it ... did you notice that?

Here's what he said ...

Dave, as a fellow engineer....Your math skills are not lacking...they have misrepresented you....

Go take a lesson from a couple of engineers!

Eric...    
Quote
Dave, 1% of the population contracted a particular disease last year. This year, 2% of the population contracted the same disease.  Now, did the number of people contracting this disease increase by 1% over last year, or 100%?
 Obviously, 100%.  And you can bring me examples like this til the cows come home and it won't change the fact that ...

IT DOESN'T APPLY TO THIS SITUATION

We are trying to determine 'How much more similar to humans are chimps than gorillas?'  And the answer is emphatically, absolutely, earth-shakingly NOT 40% (or 50 or whatever).

It is less than 1/2%.

Get over it.

*sigh* Dave, do you believe you have accurately represented PuckSR's comments with that selected quotation?  You are a liar, Dave.

I missed it [your mathematical demonstration that 1/2% is meaningless], eh?  Please show me the stats, Dave.  You have presented nothing more than your visceral reaction to the magnitude of a number.  Apparently, 1/2% is meaningful in disease rates, but not in mutations.  How do you decide this, Dave?  I'm sure you have an objective method?

Now answer the question about statistical significance and what it means in this case.  Hint: It has little to do with whether we frame the question (and respecitve percentages) as "How similar are humans, chimps and gorillas?" vs. "How different are humans, chimps and gorillas?".

Maybe another fellow engineer can explain it to you?  One who doesn't mislead you with, "statistically .5% is meaningless".  (Sorry, PuckSR, but that is unequivocally wrong in this case.)

Your ignorance and dishonesty are on display (yet again), Dave.

Date: 2006/06/12 07:09:07, Link 128.100.72.100
Author: incorygible
Quote
We are trying to determine 'How much more similar to humans are chimps than gorillas?'  And the answer is emphatically, absolutely, earth-shakingly NOT 40% (or 50 or whatever).


And just because you oddly seem to believe this is a completely different "situation", I guess I'll introduce the following as a brand new topic for you:

How much more different from chimps are gorillas than humans?

If you answer 1%, tell me what you'd say if your state government increased a given tax rate on the profits of one of your many successful business from 1% to 2%.  If it represented publically that it had only increased this tax rate by 1%, would you dispute its claims that the difference is therefore meaningless? How?

Date: 2006/06/12 07:16:17, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 12 2006,12:09)
Argy...    
Quote
Whoops, it looks like you missed my question.  AFD, are chimpanzees statistically significantly more similar genetically to humans or gorillas?  I'd like to hear you answer this question directly.
Sure, if by 'statistical significance' you mean a difference that we can measure.  Obviously, we can measure 1/2%.

But it is nothing to write home about if you are using the data to try to show how much closer chimps are to humans than gorillas are.

Way to go, Dave.  You just proved your lack of math skills when it comes to the entire field of statistics.  So while PuckSR's claim of "misrepresenting" your math skills is (only) correct if one (erroneously) thinks we are questioning your abilities to divide one number by another (hint: we haven't; not once), you have demonstrated that you are completely innumerate when it comes to evaluating the validity of practically any scientific claim.  Oh, and no, Dave, "statistical significance" (anyhigh-schooler, or at worst undergrad, who knows what it is wouldn't have included the scare quotes) most certainly, earth-shakingly does not mean "a difference that we can measure".

Good show, Dave.  Back to school.

Date: 2006/06/12 07:31:17, Link 128.100.72.100
Author: incorygible
Quote (Faid @ June 12 2006,12:24)
Dave, in your worldview, are differences between chimps and gorillas significant, or not?
Are differences between chimps and humans significant, or not?

And what does this data say about that to you?

Clearing up your case would help you make your point -if you have any.

And Dave, please add a reply to normoering in your answer:

If the differences between chimps and humans ARE significant, how does this affect your definition (and required number) of kinds?  After all, larger differences (say between chimps and gorillas, chimps and orangutans, different species of mice, millions of different species of beetles, etc., etc., etc.) would also be significant enough to imply separate "kinds", right?

If the differences between chimps and humans ARE NOT significant (i.e., "nothing to write home about"), how can you be sure this isn't microevolution within a "kind"?  After all, if chimps, gorillas and orangutans are in the ape kind, why aren't we, since we fit in there nicely at a meaningless 1/2%?

Date: 2006/06/12 08:36:21, Link 128.100.72.100
Author: incorygible
Quote (ericmurphy @ June 12 2006,13:06)
Now, are humans and chimps twice as close to each other as either is to gorillas? Or are they only 1% closer to each other than either is to gorillas?

Actually, to avoid Davey weasling out of the point of our shared message on semantics, the answer to your question (framed as it is) is actually, "a little more than 1% closer to each other than either is to gorillas" (=99/98).

However, if the question is: "Are humans and chimps twice as different from gorillas as they are from each other? Or are they 1% more different from gorillas than from each other?" Then the answer is, "twice as different" (=2/1).

Dave, pay careful attention to the fact that I (and others) have used the "40%" (or 100% or whatever) figure only when talking about the degree of difference, which is perfectly valid and on-point in this discussion.

Of course, since we're talking about the EXACT same thing, we're merely illustrating Dave's rhetorical gamesmanship.  Whether 1% or 100%, what matters is millions of data points examined and p<0.001.  This is what Davey doesn't get.

Note that this discussion of genetic similarities began back on May 24 when I pointed out (via Dave's abandoned Fiesta/Aerostar analogy) that a Toyota (human) was more similar to the Fiesta (chimp) than other Ford models (gorillas and orangutans).  Since then, we've been dealing with 1% semantics, and no matter how many times (many!;) Dave has been asked, he's stubbornly refused to address how even that 1% could exist under his "CGH". Since he admits that he doesn't doubt that we can measure 1/2%, his "1%" argument is meaningless.  Under the CGH, it shouldn't even be close.  Note my long post (May 25) considering the implications of this for the CGH:

   
Quote
You then counter with Creationist Theory.

Initial conditions: the human kind and the ape kind were separately created, and never shared a common ancestor.  Already we’re in trouble, because we have no information on the genome of those two ancestral kinds.  We have reason to suspect they were similar (common design, like Escorts and Tauri in 1985), but we don’t know how similar.  We can’t do the same kind of relative calculations that I did by assuming one common ancestor (which do not require knowledge of its actual genome, just that it was shared).  However, we do know that any differences between these two ancestral kinds should inflate the frequency of (H(CG)) phylogenies predicted.  So right from the initial conditions, you predict that, when we look at a lot of genes to get overall frequencies, the predicted frequency of the relationship (H(CG)) will be greater than 33%.

Creationist Prediction:  We don’t have any information on when (relative to initial Creation – actual years don’t matter for this) chimpanzees and gorillas diverged via “microevolution” (changes within a Created kind).  However, we know it was some time since the Fall.  Without relative time-spans like I had, we can’t do similar estimates like I did, but we can predict that the shared ancestry of chimps and gorillas prior to divergence will increase the frequencies of (H(CG)) even further (as it did for the (G(HC)) phylogenies in my example).

So you end up predicting that more than (far more than?) 33% of sequences we look at will group chimps and gorillas as closer to each other than to humans, less than 33% of sequences will group humans and gorillas as closer to each other than to chimps, and less than 33% of sequences will group humans and chimps as closer to each other than to gorillas.

So, armed with our predictions, we meet back up in a bar 20 years later to discuss the results.  I bring along some papers from the prolific new genetics literature.  Specifically, I show you the following:

Satta, Y., J. Klein, and N. Takahata. 2000. DNA archives and our nearest relative: the trichotomy problem revisited. Mol. Phyl. Evol. 14:259–275.

Chen, F.-C., and W.-H. Li. 2001. Genomic divergence between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 68:444–456.

O’hUigin, C., Y. Satta, N. Takahata, and J. Klein. 2002. Contribution of homoplasy and of ancestral polymorphism to the evolution of genes in anthropoid primates. Mol. Biol.
Evol. 19:1501–1513.

Kitano et al. 2004. Human-Specific Amino Acid Changes Found in 103 Protein-Coding Genes. Mol. Biol. Evol.:936-944.

Combined, these studies examined hundreds of sequences for their predicted phylogenies.  Each one found that, on average, approximately 60% of these sequences predicted the (G(HC)) tree (i.e., humans and chimps closer to each other than to gorillas), and the remaining 40% predicted the remaining two trees in roughly equal frequencies (i.e., humans and gorillas closer to each other than to chimps, and chimps and gorillas closer to each other than to humans).  (You can look this up if you don’t believe me Dave – I’m more than halfway here.)


Note that, other than saying he's "analyzed" this and will get back to me, Dave has never responded to the question (which I and others have asked again today): why is Dave's CGH qualitatively wrong?  (Edit: I just realized that CGH, used here as an initialism for "Creator God Hypothesis," might serendipitously -- or at least mistakenly -- imply "Chimps, Gorillas, Humans" in this context.)  Oh, he's asked repeatedly (and been answered repeatedly) for how I derived my own (more accurate) "evolutionary" predictions.  And Dave, you can claim all you want that I haven't answered this to your satisfaction, if only because I haven't reproduced entire books at your lazy demand, but summarized and cited them instead.  Of course, this is (once again) completely irrelevant to the question at hand: evolutionary theory could fall tomorrow and your CGH wouldn't be any closer to reflecting observed reality.  You have completely failed to address the failure of your "hypothesis" to account for the above data (and note that "1%" doesn't appear in there anywhere).

Date: 2006/06/12 09:01:27, Link 128.100.72.100
Author: incorygible
Quote (improvius @ June 12 2006,13:54)
The funniest part of this is that Dave's argument boils down to something like, "humans, chimps, and gorillas are all essentially the same thing."  Which actually is true, if we were comparing them to all other organisms.  But since we are focusing ONLY on humans, chimps, and gorillas, the 40% figure is obviously much more significant.

Yup.  One way or the other (probably both), he's making our points for us.

Best case scenario for Dave is to argue that genetics simply cannot be used to trace the history of organisms (which leaves us pretty much with the Bible's description of "humans and other stuff" for created "kinds", and nowhere to go from there).

Meanwhile, cosmology cannot be used to trace the history of the universe.  Geology cannot be used to trace the history of the earth (unless we're talking about two questionable RATE results in millions, in which case 0.0001% is meaningful).  Statistics cannot be used to discuss the validity of differences among data sets.  Linguistics cannot be used to trace the history of languages.  Am I missing any other field of study that needs to be discarded in the name of Dave's "hypothesis"?

Date: 2006/06/12 09:14:02, Link 128.100.72.100
Author: incorygible
And I guess I can add:

Analogy and other figurative language cannot be used to represent something you don't want to believe. Empirical data is not "evidence". Citations and references cannot be used to support arguments.  Lies cannot be used to establish dishonesty.  And of course, nothing that takes more than five sentences to explain can be true.

Date: 2006/06/12 10:23:41, Link 128.100.72.100
Author: incorygible
Quote (jeannot @ June 12 2006,14:59)
What's also matters is the relative time of divergence between humans and chimps (homininae and gorillinae to be accurate) compared to chimps and gorillas.
And it's not based on homology, but on difference. The last common ancestor of chimps and gorillas is 40% older than the LCA of chimps and humans, not 0.5% (assuming a molecular clock).

Yup.  But that's what evilutionary theory says, and the very idea that extant genomes will reflect ancestral genomes via a molecular clock is one that Davey doesn't seem to buy.  Nevermind the supportive external evidence from fossil hominids (when talking about the ape thing) and other fossil species (when talking about other molecular clock applications).

Actually, that's something else Davey should address.  The fossil record for early apes (e.g., the LCA of chimps, humans and gorillas) is quite weak (i.e., nothing very close to the LCA has been found, as far as I know).  But before Dave starts trumpeting that fact as a nail in the coffin of evolution, perhaps he can fill us in on why this would help his 'hypothesis'?  After all, paleontology in the framework of evolution might not expect to easily find fossils of such transient (and presumably low-abundance) species, especially given the habitat.  But as I understand Dave's hypothesis, when the Flood hit, the entire ape kind would have existed as the LCA of chimps, gorillas and orangutans (thereby allowing it to be preserved by two individuals on the Ark).  Since fossils were created by the Flood, where are the remains of this hypothetical ape (minus humans) LCA?  We have fossils that fill in the story after the Flood (how does that work?!;), when the species had already diverged, but no original ape-kind remains to speak of, which forces us to apply these indirect molecular-clock methods to get our best estimate of time since divergence.  And of course, that estimate, based on extant genomes, soundly refutes Dave's predicted human-ape phylogeny.  Again, why don't we observe what the CGH neccessarily predicts?

Date: 2006/06/13 09:19:21, Link 128.100.72.100
Author: incorygible
Okay, Dave, so if I understand your position re: humans/chimps/gorillas correctly, you really are claiming comparative genetics tells us nothing about the relationships among organisms.

I say this because you haven't bothered to address my question, asked over and over again, about why your 'hypothesis' neccessarily predicts genetic relationships contrary to observed reality.  You merely assert (again) that chimps and gorillas shared a common ancestor, but humans didn't.  You state, absent anything that could even remotely be called support, that the genetic distance we measure between gorillas and chimps is the result of natural microevolution, but that the smaller distance we measure between chimps and humans (and shared homologies not present in gorillas) simply isn't.  Your support for overturning the entire field of genetics (be it evolution, microbiology, forensics, etc.) is, "Just look at them.  They're both hairy and in the zoo, but we're not."

So when asked to defend your "Creator God Hypothesis" against a direct challenge that, among many other failings, it neccessarily predicts biological observations contrary to easily measured reality, your answer is that reality is wrong and DNA means nothing (unless you want to trot it out as some mystical code of the Big Kahuna).

"Just look at them."

Got it.  Maybe that counts as evidence in the circles you travel in, but not at the grown-up table, Davey.

Date: 2006/06/13 09:43:05, Link 128.100.72.100
Author: incorygible
Quote
Just look at them, Ved.  They [Chimps and Gorillas] are hairy all over, have hand-like feet, are good at climbing, have funky lips and beetle-brows, make animal sounds, both live in zoos, etc. etc.  Think about how silly it sounds to ask a question like you just asked.


By the way, Dave, exactly how much "looking at them" have you actually done?  Ever actually watched a gorilla climb a tree?  When they do (much, much less often than chimps; generally only to play or harvest fruit), they do so very carefully.  Why?  Because their "hand-like feet" are not well designed (yuk yuk) for grasping tree branches.  Ever seen a gorilla brachiate?  Very, very rare.  They climb quadrupedally, like, oh, I dunno, a man going up for coconuts.  Ever seen a silverback off the ground?  Doubt it (happens about as often as you catch me in a tree).  All in all, gorillas are probably closer to us in terms of tree-climbing skills than they are to the aerial chimps.

Just look at 'em, eh?

Date: 2006/06/13 10:41:35, Link 128.100.72.100
Author: incorygible
Dave, that you imply (then amusingly deny) a conspiracy amongst scientists (not to mention ATBC forum-goers) reveals that you have given very little thought to where people stand on things and why they stand there.

You view this as a war, wherein you are the sword and shield of God, and we are the assembled host of the devil (or at the least the guerilla fighters of a fallen world).  Have you not noticed that you are tilting at windmills?

One has only to look at your laughable summaries to see your ridiculous ideas are, in fact, being attacked on all sides, but that does not a war make, Dave.  Instead, if you could step back for a second, you would see that you have launched your assault, not on a collective enemy, but on myriad separate fields of knowledge.  The reason you don't hit any real target, but claim to have landed every shot, is that you have made everything a target. You don't see that you are in a forum where you don't get to make up the rules of logic and evidence.  You don't see that you are arguing against a very diverse group, each member of which has an individual field of expertise that can easily and singlehandedly dispatch your young-earth, anti-evolution 'arguments' in any rational, open mind.

The war is in your head, Dave.  There is no conspiracy.  Nothing resembling lock-step.  You scream at the top of your lungs (or at least in excessive boldface and caps-lock), "The truth is X, and the Bible tells us so!"  Your shouts are subsequently met by a thousand puzzled or annoyed or indifferent or mirthful glances, and a resounding reply of, "Eh?  Not from where I'm standing!"

Have you considered where each of us is actually standing, Dave?  I myself am standing perhaps right at the heart of your windmill, doing research in evolutionary biology (i.e., I can "stick to biology"; it's far more than enough).  You've identified others standing elsewhere, with expertise in geology, physics, cosmology, radiometric dating, paleontology, genetics, medicine, linguistics, psychology, anthropology...  And let's not forget, most recently, PuckSR, standing in close to the same place you are (i.e., the revealed truth of the Bible), also replied in kind: not from where we're standing, Dave. Yes, we're practically everywhere.  In your delusional mind, that probably sounds insidious.  It's not.

Meanwhile, you and the sources you cite are invariably standing in the exact same unenviable place, making the exact same arguments with the exact same motives.  We've heard 'em before, and even when we answer in unison, it's from a million different voices in a million different places.  No conspiracy neccessary.

Obviously, someone is standing in the wrong place, and it's pretty easy to see who -- they're all piled on top of each other in a singularity of ignorance, arrogance and dishonesty, vainly trying to deny the validity (or very existence) of any position but their own.

Date: 2006/06/14 05:51:34, Link 128.100.72.100
Author: incorygible
Afdave...

 
Quote
Incorygible ... Common Design Theory predicts that there will be much genetic similarity among apes and humans.  Remember the Ford analogies?  What you keep overlooking is non-biological differences.  You are focusing all your attention on the stuff you can measure and the things you can count, i.e. nucleotides, and you are disregarding everything else.  So I have answered your question.


Indeed you have answered my question, Dave.  Congratulations on getting something right (the bold part).  All my attention is indeed focused on the stuff we can measure and the things we can count (i.e., objective, observable reality).  If you can't defend your ideas on these grounds, or if you want to hold discourse beyond observable nature, go find a church group or a bong hit.  Furthermore, we are talking about life and its various forms, right down to the minutiae of morphology, genetics, behaviour, etc.  If you're not talking about biology, but want to talk about "non-biological differences", go right ahead. Discuss souls, revealed destinies and Biblical doctrine anywhere you want, but don't pretend it has any relevance whatsoever in a scientific forum (including science classes).  You have just admitted that "Common Design Theory" says absolutely nothing about biology, and you would rather we didn't pursue any apparent relevance it might have to "stuff we can measure", since it can't really account for what that "genetic similarity" actually tells us (i.e., any actual hypotheses we try to develop from "common design", beyond assinine car analogies, turn out to be dead wrong).

 
Quote
Now how about my question?  How does your 1985 texbook justify the assertion that gorillas diverged 8mya and chimps and humans diverged 5mya?  I need a better answer than "well they got it from some other textbook."  Who came up with all thes millions of years conjectures in the first place?  Is it all based on genetic differences and known genetic drift rates or something?


Once again, I've given you the five-sentence version (hint: over a century of study in hominid fossils dated by various methods, gross morphology, and decades of protein comparisons).  I've given you the sources for you to learn more.  I've even told you how things have changed since the 1980s based on more comprehensive genomic research (e.g., I think it's now about 7 million years for gorillas and 4-5 for chimps, though the recent Nature paper makes a good case that this was a rather messy split and full divergence may be even more recent).  Beyond that, go do your own homework, Dave.

 
Quote
I am dead serious.  I'm saying some things that sound silly and obvious, but I do so with good reason.  When you really think about Ved's (or whoever it was) question, you realize that it is truly the question that is silly, not my answer.

Let me put it to you this way ... where would a new freshman guy on campus go looking to get a date?  The sorority house?  Or the zoo?  You biologists get your micrometers out and get all worked up ... "My goodness!! Chimps and humans share 98.5% genetic similarity and gorillas and chimps only share 98.0%!! Heavens to Betsy!! We're related!! And boy are we close!!"

Well ... I say if we are so close, why don't the freshmen go to the zoo to get dates instead of the sorority house?

The fact is guys, we're NOT close.  Our DNA is very similar, yes.  But when comparing everything else, gorillas are MUCH closer to chimps than humans are to chimps. This is so obvious that it's pathetic that I have to explain it to you.

You are the silly ones.  Not me.


Not from where I'm standing, Dave.  Silly is trying to pretend a gut feeling and the mating preferences of frat boys constitute any form of valid/rational/scientific argument regarding common ancestry of the great apes.  Besides which, if you'd read (and if you could understand) the Nature article, you'd see that we humans went to "the zoo" for our mates for quite some time.

Frat boys don't tend to pick up at family reunions, either, Dave.  Does this make them unrelated to these individuals?  Frat boys tend to have racial and other physical preferences in potential mates as well (e.g., no fatties when sobre!;).  Does this make anyone without these preferred characteristics inhuman or subhuman?

And what is this "everything else" you speak of comparing?  It's obviously not genetic, or even biological (by your own admission).  So what else matters, Dave?  Your gut reaction to similar vs. different, human vs. subhuman, sorority vs. zoo?  Not only does that dog not hunt in any rational discourse, Dave, it's really a little frightening to think this is the type of "truth" you would have your kids trust in (not to mention ironic when you consider your ilk likes to blame racism and other evils on evolutionary theory).

Date: 2006/06/14 06:17:29, Link 128.100.72.100
Author: incorygible
Quote (argystokes @ June 14 2006,10:49)
I don't think those questions are particularly vague, Dave.  Let's see your calculations.

argystokes, there HAS to be a better way to celebrate your birthday!  (Have good one.  ;)  )

Date: 2006/06/14 07:03:55, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 14 2006,10:59)
Incorygible...  
Quote
If you can't defend your ideas on these grounds, or if you want to hold discourse beyond observable nature, go find a church group or a bong hit.
That's ridiculous.  There are many fields of science which depend upon indirect evidence of phenomena which we cannot measure or count.  Meyer and others have pointed out many of these fields.

Wouldn't it be great for you if evolution, geology, and all the other sciences you seek to overturn were among them?  Then maybe your abstract concepts and lack of supportive data would be on an equal footing?

Quote
When I talk about non-biological differences, I am not even getting to spirits, souls, revealed destinies, etc.  I am talking about advanced linguistic skills, abstract thinking ability, scientific inquiry ability, the capacity for religious thinking, the ability to create civilization, etc. etc.


Funny you mention advanced linguistic skills.  I'm working on a paper on behavioral laterality in fish.  Just did a comprehensive lit. review of cognitive lateralization.  Read a ton of papers on hemispheric cognition in the human brain, specifically as it pertains to language and communication.  Does it surprise you that the authors of these papers measured and counted lots of stuff (I can't remember a single analogy)?  Didn't see any of it overturning evolutionary theory (quite the contrary, in fact).

And did you really just use human "scientific inquiry ability" as "non-biological" evidence to overturn the fruits of that inquiry?  You're blowin' my mind, Dave.

Finally, please show me any scientific field, as theoretical as you want, where an argument by analogy and vague gut feelings (it's obvious!;) were used to deny the validity of measurements and other empirical data that were readily available.  My work is actually predominantly theoretical, Dave (despite your implication that I'm a close-minded impiricist), and I'll tell ya something: when you're staring at over a century of work, entire libraries of accumulated data, a vast number of different scientific disciplines agreeing on the same thing, and the very DNA of every living thing on this planet, you better have something better than Ford analogies, appeals to abstract thoughts, and a trip to the zoo.

 
Quote
Quote
Beyond that, go do your own homework, Dave.
I've read your books and I don't buy the millions of years.  My question is "On what basis do YOU buy them?"


Fine. You've read what I have (sure you have), critically analyzed what I have (sure you have), and you don't buy it.  Largely on "non-biological" grounds, based on who you'd do in the zoo (maybe AIG can add that to their "goo to you" slogan?).  Me, I do buy it, Dave, and your question is answered.  I generally trust the books, the thousands of papers I've read, the data they present, the stats they use to determine what constitutes relevant findings, the methodology they use, the cohesion of independent lines of inquiry, the scientific method in general, and peer review.  When it comes to ape divergence, I trust the history (ever-changing with the data) of findings in paleontology, morphology, allozyme analysis, molecular clocks, and most recently, sequencing of entire genomes.  I trust hard-working, self-critical, peer-review surviving researchers like myself, who are actually working in the relevant field (I'm not).  But of course, while I'm reading as much as I can of what they've written, I always keep a careful eye out for something I don't trust and that they can't defend.  Easiest way to get famous in science is to overturn a long-standing idea.  Of course, bad analogies and my own mating preferences don't work in this regard.  That's especially true for anything that has survived the inherent scientific cannibalism (and non-scientific objection) as long as evolution has.

Date: 2006/06/14 07:22:00, Link 128.100.72.100
Author: incorygible
By the way, Dave, when you mentioned "abstract thinking ability" as an "immeasurable", "non-biological" argument against common ancestry of chimps, humans and gorillas, that paper I cited for ya (with the abstract) on May 24 must've slipped your mind, eh?  I know that when you've read as much on this issue as you have, it's easy to forget.  Here it is again:

Quote
Hey, Dave, here's a really interesting one among many.  Not only do the bulk of genetic data examined support that chimps are closer to humans than they are to gorillas, it turns out that this relationship holds for the pattern of gene activity in our brains (actually, in that very part of our brains that handles cognitive tasks):

Quote

Title: Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles
Author(s): Uddin M, Wildman DE, Liu GZ, Xu WB, Johnson RM, Hof PR, Kapatos G, Grossman LI, Goodman M
Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (9): 2957-2962 MAR 2 2004
Document Type: Article
Language: English
Cited References: 50      Times Cited: 32      Find Related Records Information
Abstract: Gene expression profiles from the anterior cingulate cortex (ACC) of human, chimpanzee, gorilla, and macaque samples provide clues about genetic regulatory changes in human and other catarrhine primate brains. The ACC, a cerebral neocortical region, has human-specific histological features. Physiologically, an individual's ACC displays increased activity during that individual's performance of cognitive tasks. Of approximate to45,000 probe sets on microarray chips representing transcripts of all or most human genes, approximate to16,000 were commonly detected in human ACC samples and comparable numbers, 14,00015,000, in gorilla and chimpanzee ACC samples. Phylogenetic results obtained from gene expression profiles contradict the traditional expectation that the non-human African apes (i.e., chimpanzee and gorilla) should be more like each other than either should be like humans. Instead, the chimpanzee ACC profiles are more like the human than like the gorilla; these profiles demonstrate that chimpanzees are the sister group of humans. Moreover, for those unambiguous expression changes mapping to important biological processes and molecular functions that statistically are significantly represented in the data, the chimpanzee clade shows at least as much apparent regulatory evolution as does the human clade. Among important changes in the ancestry of both humans and chimpanzees, but to a greater extent in humans, are the up-regulated expression profiles of aerobic energy metabolism genes and neuronal function-related genes, suggesting that increased neuronal activity required increased supplies of energy.

Date: 2006/06/14 08:14:00, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 14 2006,12:51)
It was Creationists who forced geologists to discard 'uniformitarianism' in favor of 'neo-catastrophism' and 'episodicity', it was Creationists whose typological perception of nature was vindicated by molecular biology, it was Creationists whose 'Anthropic Principle' has now been vindicated, and it will be Creationists who keep pressing ahead on the cutting edge of science in spite of conventional scientists who don't appreciate their contributions.

Oh really now?  So now you CAN explain "ape type" vs. "human type" via molecular biology?  Didn't you just fall back to "non-biological" comparisons?  Vindicated, indeed.

Dave, can you please define these biological "types" for me?  I mean, beyond "humans and other stuff" and "who would you do in the zoo?"  It would be very helpful.  As we speak, I'm working on a paper examining species concepts, attempting to come up with clear, natural, objective "types" (units) for endangered species legislation, and the input would be invaluable.

Of course, since you claim not to have studied the prolific, peer-reviewed literature on "baraminology", maybe you can't help me.  In which case, how can you be sure of "vindication"?  Or are you claiming molecular biology has posed no problem, challenge or contention in Linnaean taxonomy?  Ever been in a room with taxonomists, Dave?  It's bloody dangerous: you get lumped AND split before you know what hit you.

Oh, and why do you ignore those revolutionary Creationists who established that the Earth was much older than a few thousand years, hmmm?

Date: 2006/06/14 09:45:26, Link 128.100.72.100
Author: incorygible
Quote (deadman_932 @ June 14 2006,14:20)
Here's another amusing "fudge" from Humphreys, AFDave--The e-mail you cited and Humphrey's response as to why he had NOT done the He isotope ratio testing that would substantially confirm/disconfirm his claims:  

 
Quote
From: Russ Humphreys
Sent: Tuesday, June 13, 2006 3:14 PM
To: Dave Hawkins
Subject: Re: 3He/4He in Zircons?

Hi Mr. Hawkins:

No we didn't think to ask the lab to look for 3He in the zircons because it wasn't the usual practice among helium/zircon researchers then (or at least I'd never heard of the practice then).

I'm confused by this email, too.  To be specific, I'm wondering what Humphreys, the bold CREATIONIST PIONEER who innovatively chose to employ helium/zircon dating, could possibly mean by "usual practice among helium/zircon researchers then"?

Dave on June 2:

Quote
I found it interesting that Norm had not heard of anyone using helium to date rocks.  That's because creation scientists are pioneers, Norm.  Pioneers get laughed at but they keep pressing on because they care about the truth, not peer pressure.  Remember Galileo and Copernicus and Kepler?  Same deal here.


Dave on June 3:

Quote
OK.  So the creos didn't discover it.  Too bad!  They are just RE-discovering it along with the Yale lab quoted above.


Dave on June 7:

Quote
Can you give me a paper that shows non-ambiguous data on He diffusion in zircons prior to Humphreys et al?


Dave on June 8:

Quote
Oh really, JonF?  As early as 2001, huh?  Do you know when Humphreys published his predictions?  Did you foget that little detail?  I thought so.  Here ... I'll help you.  It was 2000 in this publication ...    


Quote
Anyone with any sense or any ethics at all would know that I meant before he PUBLISHED his predictions.  It doesn't make any sense to get data published in 2001 to try to make some predictions in 2000, now does it?  As for your other sources, the RATE Group looked at everything and nothing was relevant except for the ambiguous Soviet data mentioned.



Dave, we know your answer for where Cain found his wife.  My question for you is: when Humphreys was busy pioneering/discovering/re-discovering helium/zircon research, where did he find a "usual practice among helium/zircon researchers"?

Date: 2006/06/15 08:17:06, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 15 2006,11:27)
Incorygible...  
Quote
By the way, Dave, when you mentioned "abstract thinking ability" as an "immeasurable", "non-biological" argument against common ancestry of chimps, humans and gorillas, that paper I cited for ya (with the abstract) on May 24 must've slipped your mind, eh?
OK.  So you agree it's measurable?  Then let's measure it.  I propose a test to quantify all the non-biological differences among humans, chimps and gorillas.  What do you think this test will show?

It will show that humans are far different than the apes, and it will show the apes are quite similar.

Others have provided exactly the same response I will:  Notice how I put quotes not only around "immeasurable", but also around "non-biological"?

So what do I think WHAT test will show, Davey?  You don't have a test.  You haven't defined any "measurable" "non-biological" traits, much less any means of testing them.  The "measurable", "non-biological" differences you have hinted at are either very much biological or completely immeasurable.

Furthermore, I cited a paper showing the MEASURABLE BIOLOGY behind cognition in the great apes.  It doesn't support your bold(ed) prediction.  Quite the contrary.

Quote

Incorygible...  
Quote
Oh really now?  So now you CAN explain "ape type" vs. "human type" via molecular biology?  Didn't you just fall back to "non-biological" comparisons?  Vindicated, indeed.
That's tough because they are so close.  What I was referring to was Michael Denton's information about the discoveries in molecular biology vindicating the pre-Darwin typological perception of nature.  Have you never read "Evolution:  A Theory in Crisis" ??  Molecular biology proved conclusively that nothing is "ancestral" to anything else as evolutionists would have liked for it to.


So in other words, no, you can't explain your "ape type" vs. "human type" hypothesis via molecular biology.  Big surprise.

No, I haven't read Denton's book.  If the title alone wasn't enough to make me keep my money in my wallet (crisis? not from where I and the entire scientific community are standing, Dave), the reviews would have been.  If the reviews weren't, your nonsensical summary would have been.  What the he11 could you possibly mean by "nothing is ancestral to anything else as evolutionists would have liked"?  I'm pretty sure molecular biology can still identify ancestral lineages at the organismal level, unless something drastic changed while I wasn't looking?  Can my DNA no longer reveal me as the descendant of my mother and father?  Why didn't I get the memo?  So "nothing is ancestral to anything else" seems, er, a little off.  If this is some reference to fossil remains being unlikely "ancestors", well, duh.  If it implies that molecular biology has "proved conclusively" that there could be no ancestral precursors to the biochemistry we observe at present, then you (and Denton and Behe) are simply wrong.  Or can you direct me to an issue of Cell or some other molecular biology journal where I will find a series of papers that "prove conclusively" that "nothing is ancestral to anything else" (whether "evolutionists" like it or not)?  Actually, Dave, I'll settle for a single (peer-reviewed!;) paper showing that a single biochemical characteristics could have no ancestor.  Good luck.  Until you show me that, then I have to believe you're just blowing smoke up my a$$ with this "molecular biology shows that nothing is ancestral to anything esle" garbage.

Date: 2006/06/15 09:57:53, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 15 2006,14:08)
Incorygible...  
Quote
So what do I think WHAT test will show, Davey?  You don't have a test.
I do.  It's called the SAT Test.  You go find the gorilla and the chimp.  I'll provide the human, the SAT test and the testing room. We'll give them each the same amount of time.

Guess what the result will be!!

(Hint: the gorilla and chimp results will be similar and will differ greatly from the human!;)

(I really am having fun with this topic ... can we keep it going a long time?  Eric?)

Sounds fun!  Let's apply for a grant! I'm happy to write it up for you (I'm good at it by now), and submit it to the appropriate agencies -- just help me fill in the blanks, m'kay?

First, we'd better come up with a good, bullet-proof reason for why we expect this test to demonstrate common ancestry of the gorilla and the chimp, but not the human. You know, something that will really, really make it seem a more reliable method for measuring ancestry and evolution (since the Fall, of course, Davey) than that whole DNA thang (and physical anthropology and comparative morphology and microbiology and...).  After all, those agencies have pumped an awful lot of money and credibility into genomic research (and the others), and they don't like having egg on their face.

Next, we'll have to demonstrate there is no subjective bias that may enter into our test.  Since inherent biases against different races and classes of HUMAN have been demonstrated for standardized testing, including the SATs, we better come up with a way to convince 'em there is no introduced anti-"ape" bias.

Third, we'll have to do something about those competing labs that will want to shoot down our results by measuring something they foolishly think is more relevant to ancestry and evolution than one's answer to "Two trains leave Chicago at a speed of..."  I suspect the appropriately named Dr. Wildman over at Wayne State may try to scoop us by repeating the test with some fancy electrodes and cellular assays, then claiming that, despite our airtight scoring system, the patterns of gene expression and electrical activity while taking our test were much more similar in the human and chimp brains than in the gorilla brain.  We wouldn't want that.

Fourth, we might want to rule out some additional confounding variables.  Developmental and environmental effects come to mind.  So, let's eliminate any regional bias by using an African human (Africa's all one environment, right?).  And let's standardize by using two-year-olds.  And let's control for any differences in parental care or social learning -- if we put the newborns in cages right now, they'll be ready for those SATs by the time the funds come in.

So you get to work on shoring those up, and I'll start drafting the application.  Whodathunk overturning so many years of research in so many scientific disciplines demonstrating common ancestry of the great apes (including us -- the very thought!;) could be overturned by more careful observation and comparison of the collegial activities (both curricular and extracurricular!;) of humans, chimps and gorillas.  We're gonna be famous, Dave!

Oh, can we include the orangutans in there, too?  If I did have to go to the zoo instead of the sorority house to meet women, that luxurious copper hair and laid-back demeanour would definitely win me over.  Especially when compared to the violence of the chimps and the rather scary stature of the silverback guarding his harem.  Of course, that's only because my zoo doesn't have bonobos...those girls (and boys!;) are FREAKS, Dave.  I mean it.  Hey, can we have a bonobo?

Date: 2006/06/15 18:59:22, Link 24.42.173.36
Author: incorygible
Congrats! :)

Date: 2006/06/19 16:11:01, Link 24.42.173.36
Author: incorygible
Quote (Arden Chatfield @ June 19 2006,11:17)
Quote (afdave @ June 19 2006,11:06)
Here guys ... let me simplify this for you ...

1) Arden gave 3 different language comparisons
2) His language comparisons simply showed that those three are in the same family
3) AF Dave's 3 comparisons showed not only how his three are in the same family, but also specifically how P=S+F.

Conclusion:  AFDave's list gives more detailed info.

Okay. Let's get this out in the open.

AFD gave three languages.

I added THREE MORE to that. Six languages.

My chart contained all the data your chart gave.

So explain please why your chart 'gave more detailed info'?

Arden, Arden.  You're forgetting the new "Law of Information".  Evolution (and by extension, "evolutionists") simply cannot generate new information.  The law is, of course, universal, and applies to random internet diatribes as much as random mutation.  Furthermore, it is conservative, and ensures that the specified complexity of a YEC argument cannot exceed that of a rather slow four-year-old.

Date: 2006/06/20 03:04:53, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 19 2006,21:53)
Oh, Incorygible ... glad to see you are back ...

Wish I could say I was glad to be back, Dave, but thanks.  Oh, by the way, you should check out what that chimp is saying about you -- boy, was he embarrassed!

I'm glad you had a nice Father's Day.  Me, I took a few days off and spent a long weekend hooking and grilling some of our more extended family members (not to mention swatting no small number of the family pricks).  Because yes, Dave, not only are you an ape, but phyletically speaking, you're also a fish.  Good luck with that one.  I'm sure you'll figure out how that works into the whole "vindicated, pre-Darwin typological perception of nature".  I look forward to being regaled with tales of how you and your family drove to the local aquarium and tried to take a shark to your 4th of July BBQ.  What fun!

Anyhow, now I'm back to the daily grind.  For most, that would probably mean making ends meet, working for my pay, trying to keep my girlfriend happy, and spending time with friends and family.  Of course, being a scientist with so many funny ideas that need promoting (oh no, what do the latest polls say about what the public believes?!;), my daily routine actually involves trying to come up with more insidious ways to pull the wool over everyone's eyes and make the earth and the universe look really, really old.  After all, before health and love and wealth and happiness, my greatest desire is that the planet be exactly 4.5 billion years old.  Nothing else matters.  Why?  I dunno.  I think it has something to do with fulfilling my basest desires, which I might finally get around to exploring if we ever make this dog hunt.

Date: 2006/06/20 03:50:01, Link 128.100.72.100
Author: incorygible
Afdave:

Quote
Well, well, well ... I guess this is how it will be for everything I present ... That's OK.  I expected it.


Good show, Dave!  You predicted your own lack of engagement and dishonest "summaries".  Of course, we expect them now, too.

Quote
I've accomplished my goal of convincing myself...


Again, way to set that bar high, Davey.

Quote
Why are they not on the web?  Same reason most scientific papers are not on the web.  They want you to PAY for them.


I'm not in the habit of paying out of my pocket for "scientifc papers", Davey.  That would get expensive right quick.  I'm sure the RATE group's work merits my university having an academic subscription, right?  Curious that I can't find it in our catalogue nor our online service.  Maybe they should publish in one of the tens of thousands of journals we do have access to...

Quote
God is bigger than galaxies!  A novel thought for you, I know, but undeniable if we are honest.


Um, if we are honest (I can barely type this with a straight face and my breakfast where it belongs), shouldn't we agree with you that the Theory of Relativity demonstrates that God lives outside of time and space?  Thus, how can he be "bigger" than galaxies?

Quote
Why is it such a difficulty for you guys to imagine a star or a galaxy being formed with it's light field being in place?


Well, theologically speaking, the Christian God I've read about is said to be honest and forthright in his creation, and not deceptive like many of his followers.  Hence, purely on theological grounds, I take issue with the idea that He would plant evidence documenting a history that never existed...

Quote
The Apostle Paul (yeah, way back in the 1st Century) wrote about people like you ...  
Quote
"Romans 1:20 For since the creation of the world His invisible attributes are clearly seen, being understood by the things that are made, even His eternal power and Godhead, so that they are without excuse,
21 because, although they knew God, they did not glorify Him as God, nor were thankful, but became futile in their thoughts, and their foolish hearts were darkened.
22 Professing to be wise, they became fools ...


Correct me if I'm wrong, but is that not the same verse that used to (maybe still does?) make Ray Martinez cream his shorts?

Quote
Here is what a Harvard Zoology professor has to say...


Ah, you guys do love your quote mining.  Given his credentials, I'm sure you would consider Lewontin equally authoritative in everything evolutionary, right Davey?  (You might be surprised at what Lewontin considers under the purview of evolution.)

Date: 2006/06/21 05:37:38, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 21 2006,09:05)
Why don't you ask your library to subscribe to AIG-TJ and CSRQ?  Most mainstream journals are predjudiced against the creationist view in case you had not noticed.

Oh, it's bigger than just that, Davey.  The conspiracy you keep alluding to goes right to the top.  Not only are the libraries and journals prejudiced, but so are the indices and search engines and reviewers and grant agencies and pretty much the entire scientific machinery.  It's amazing what a stranglehold all that "wanting to believe in an old earth" has, isn't it?  By pure desire and force of will, and despite being such a minority relative to the common-sense folk like yourself, we've managed to stifle the prolific Creationist literature that would otherwise have revolutionized the way science is practiced.  Paradigm-shifting findings beyond reproach are rotting away in the locked drawers of pioneering, true-believing researchers everywhere, waiting to see the light of day when Big Bad Naturalism is overthrown, right?  A new, utopic age of understanding awaits us, if only we can topple the current regime!  Can I please have some of what you're smokin'?

Quote
BTW ... I still don't understand why you just believe all those books you read that say the gorillas diverged at 8mya and chimps and humans diverged at 5mya.  Do you accept that with no justification from the books?  Did my silly story about going to Carrabba's help you understand why it seems so foolish to me for you guys to say that humans and chimps are closer than chimps and gorillas?


Dave, you said you read the books.  I imagine you paid careful attention to the chapters I referenced.  So you no doubt absorbed dozens of pages of text and diagrams and figures and tables on fossil hominins.  You no doubt flipped through page after page on protein comparisons (maybe after reading the prior review chapter for background on how this stuff worked, eh?).  You no doubt flipped to the references to get an idea of the actual texts and journal papers where these results were coming from (meaning you wouldn't ever contend that, even in these intro-level textbooks, the data were given "with no justification", right?).  Furthermore, you no doubt integrated this new information with the many papers and other sources you've been linked to in this (and the other) thread.  You no doubt read a few of the primary papers, just to go right to the source.  So, after following me every step of the way, as you've claimed, if you still don't know why I "believe all those books" (what a silly concept!;), I can't help you.  By the way, if you've even been reading just my posts, you'd remember that I've repeatedly stated that the most recent papers and books I "believe" actually put the LCA of all three of these great apes at about 7 mya, and the LCA of chimps and humans 3.5-5 mya (in a really messy break-up with lots of post-separation gettin' it on).  That was just a few weeks ago, Dave, and I know you've read that paper, right?  Those dates are the best we've got now, but may change when we can get at the question in even finer detail (e.g., fully sequencing the gorilla genome might revise the 7 mya somewhat).  It's amazing what avenues are open to refining one's information when you don't stop at "humans and apes are similar genetically, but the exact genetic relationships drawn from millions of data points are irrelevant -- it's the intangible stuff that counts".

As for your little story, perhaps you gleaned from my response that all it helped me understand is that you're not even trying.  You came on this board pretending you wanted to see the science.  You were shown the science.  You claimed it all seemed foolish to you, and tried to make us understand your position with a little hypothetical annecdote about table manners (following others about who frat boys find attractive and who would score better on SATs).  If you can't see why those little tales seem foolish to those of us who live and work in the reality-based, empirical, scientific community, Dave, well...what more can I say?  Other than congratulations for stumbling into the epitome of an argument from personal incredulity -- best I've seen yet.

Quote
Bigger in the sense that a painter is "bigger" than his painting.  It is fascinating to me that most of you cannot grasp the idea of God fashioning his universe as a sculptor might fashion a sculpture or a painter might paint a painting.


Okay, so you don't mean bigger in any quantifiable sense.  You really love the intangible, eh, Davey?  Almost as much as you love pretty-sounding but vacuous analogies.  So fine, God "painted" or "sculpted" us.  Therefore, maybe you want to teach Creationism in Fine Art classes?  Plenty of room for considering and portraying God there.  I myself have marvelled at the beauty of Michelangelo's portrayals of Creation, and gone through many books of Christian artwork.  Or maybe God wrote the universe and all of time into a novel to be read by his Creation?  So maybe we should teach about God in Literature?  I seem to recall reading plenty about Creation in the works of Spenser and Milton and Bunyan.  But science, Davey, well, science is about what is tangible and what we can measure.  It rarely resorts to analogy, only as shorthand for teaching, and where it does so, it is but a veneer for a deep, measurable understanding of the cold, hard facts of what is going on and how we know this.  So if you want your stuff to be under the purview of science, you'd better give us those cold, hard facts and not pretty words.  So far, you've got analogy, anecdotes, hand-waving speculation, denial of entire disciplines and libraries worth of the very methodology and empirical data that you don't have (but desperately need to be taken seriously), and a couple lousy cut-and-pasted outlying data points obtained by an even lousier method.  It doesn't take an evil global conspiracy to brush that aside with a giggle, Dave.

Quote
Eric also seems baffled that God could make a star or a galaxy with its light field in place.  What is so strange about this?  How is this somehow deceptive?  It seems silly to me for God to make beautiful stars and beautiful galaxies -- but oops!  Sorry guys ... no one can see them for another zillion years when the light finally reaches you!  No.  It makes much more sense to make them and also make them visible at the same time.  But I am interested in the "Starlight and Time" theory as well.  Not saying I buy it yet.  Don't even understand it yet.  But it sounds interesting.  Why would you not even consider either of these two possibilities?  You cannot prove your view, so it could be wrong.


Where to start with this, Dave?  Cannot prove our view?  Sure we can, as much as we can "prove" anything.  You do understand basic physics, right?  Do the names Michelson-Morley ring a bell?  Einstein?  Hawking?  If they do, we can dispense with any ideas about variation in the speed of light (because you'd be aware that this would cause more problems than it solves for the YEC argument when it comes to being even within striking distance of reality).  But you claim not to understand this yet, which is fine -- start with those names and get back to us.

For now, we'll deal just with your aesthetic argument.  Of course, you know that light isn't just something that makes stars pretty, right?  You know it contains information (real information, not the stuff you guys like to go on bout), right?  You know that this information contains a history -- times and events that can be observed, right?  If those times and events didn't happen, exactly what is your "honest" God trying to pull here?  And what of those supernovae and related phenomenon Eric asks about?  There, we have stars that we can conclude -- by the very powers of observation and reason that God granted us -- winked out of existence far more than 10,000 years ago.  Which means they never existed -- they're just potentially pretty, flashy things that God planted where we can't really see how pretty and flashy they are.  However, with our most powerful technology, we can tell that there's a really cool show goin' on.  Just a light show we can't see, Dave?  Is your God the AV guy at the biggest rock show in existence, for which we have the "obstructed view" seating?  Mine isn't.

Date: 2006/06/21 05:47:24, Link 128.100.72.100
Author: incorygible
AFDave...

Quote
At that time Ernst Mayr was reporting about 1,000,000 animal species in existence today of which only about 17,600 of these were mammals, birds, reptiles and amphibians, which of course, would be the only ones needing an ark.


Can you please qualify the "of course" in that statement?  Why would the (combined) millions of species of insects, fish (these guys are my speciality, Dave, and before you say "what! they live in water!", let me tell you they have a few tolerance limits that the flood would play havok with, to say the least), plants, fungi, arachnids, molluscs (see fish), crustaceans (see fish) and nematodes, to say nothing of many bacteria, need the ark?

Date: 2006/06/21 07:47:29, Link 128.100.72.100
Author: incorygible
Quote (afdave @ June 21 2006,11:21)
No conspiracy.  Just a rather arrogant consensus that the Bible is a fairy tale and anything that sound 'Biblical" or 'religious' is pretty much ignored with no investigation.

You're wrong, Dave.  You're not the first to use the Bible as a source of hypotheses.  It's been used in exactly that fashion for two thousand years.  Caused no small degree of consternation when those hypotheses didn't pan out.  Where the Bible matches the evidence (e.g., history), it remains a source of information.  Where it doesn't (e.g., science), there's not much left to investigate.  And "arrogance" is an interesting characterization by somebody with such lofty opinion of his own faith and knowledge that he's willing to discount practically every biologist, physicist, and geologist on the planet.

Quote
You keep repeating this, but why?  My question is why?  Why the millions of years?  Do you have some math formula or something?  Or is it just a regression of 'this book quotes this other book which quotes this other book which quotes this other book' etc. etc. all the way back to Darwin or somebody?  Who put it in print first in modern times that apes and humans had a common ancestor several mya?  And why did they say this?  That's what I am trying to get you to tell me.


Why, Dave?  Why?  I repeat it because it illustrates the difference between your worldview and mine, and the projections you make.  You are so confident in revelation without method, assertion without evidence, and knowledge without information that you assume that's where my "belief" comes from.  You really think we can trace scientific understanding of life and the universe back to the pronouncements of some prophet on a mountain top, analogous to the source of your knowledge.  Yes, Dave, books quote other books.  They summarize them, answering the "why" on one level.  If you want more, you go to those other books.  But if you really think all of evolutionary theory (or even just the phylogeny of the great apes) reduces to "who put it in print first", you just don't get it.

But to answer your simple (and rather irrelevant) question: "Who put in print first in modern times that apes and humans had a common ancestor several mya? And why did they say this?"

Once again, I will refer you to that Lewin book you said you read, specifically Chapter 3 "Historical Views", which I referenced for you:

"During the past century, the issue of our relatedness to the apes has gone full cycle.  From the time of Darwin, Huxley and Haeckel until soon after the turn of the centruy, humans' closeses relatives were regardes as being the African apes, the chimpanzee and gorilla, with the Asian great ape, the orangutan, being considered to be somewhat separate. Then, from the 1920s until the 1960s, humans were distanced from the great apes, which were said to be an evolutionarily closely-knit group. Since the 1960s, however, conventional wisdom has returned to its Darwinian cast."

...
[skip 2 pages of description regarding the players and positions in the first half of the 20th century]
...

"During the 1950s and 1960s, fossil evidence of early apes accumulated at a significant rate, and it seemed to show that these creatures were not simply early versions of modern apes, as had been tacitly assumed. This meant that those authorities who accpeted an evolutionary link between humans and apes, but did not accept a close human/African ape link, did not now have to go way back in the history of the group to 'avoid' the specialization of the modern species. At the same time, those who insisted that the similarities between African apes and humans were the result of common heritage, not parallel evolution, were forced to argue for a very recent origin of the human line. Prominent among proponents of this latter argument was Sherwood Washburn, of the University of California, berkeley.

"One of the fossil discoveries of the 1960s -- in fact, a rediscovery -- that appeared to confirm the notion of parallel evolution to explain human/African ape similarities was made by Elwyn Simons, then of Yale University. Ramapithecus was the fossil specimen, an apelike creature that lived in Eurasia about 15 million years ago and appeared to share many anatomical features (in the teeth and jaws) with hominids.  Simons, later supported closely by David Pilbeam, proposed Ramapithecus as the beginning of the hominid line, thus excluding a human/African ape connection.

"Arguments about the relatedness between humans and African apes took place against a rethinking about the relatedness among the apes themselves. In 1927, G.E. Pilgrim had suggested that the great apes be treated as a natural group, with humans evolutionarily more distant. The idea eventually became popular, and was the accepted wisdom until molecular biological evidence undermined it in 1963, the work of Morris Goodman at Wayne State University. Goodman's molecular biology on blood proteins indicated that humans and the African apes formed a natural group, with the orangutan more distant.

"Thus, the Darwin/Huxley/Haeckel position was reinstated, with first Gregory and then Washburn its champions. Subsequent molecular biological -- and fossil -- evidence seems to confrim Washburn's original suggestion that the origin of the human line is indeed recent, lying between 5 and 10 million years ago. Ramapithecus was no longer regarded as the first hominid, but simply one of many early apes."

...
[skip a few pages discussion of more recent fossil hominids, too use, etc.,  not to mention historical phylogenetic trees showing the perceived evolutionary relationships between men and apes, including a 1927 version with "negroes" and "negroids" divering not long after Neanderthal]
...

"During the past decade, not only has there been an appreication of a spectrum of hominid adaptations -- which includes the notion simply of a bipedal ape -- but the lineage that eventually led to Homo sapiens has come to be perceived as much less human. Gone is the notion of a scaled-down version of a modern hunter-gatherer way of life. In its place has appeared a rather unusual African ape adopting some novel, un-apelike modes of subsistence.

"Hominid origins are thereforenow completely divorced from any notion of human origins. Questions about the beginning of the hominid lineage are now firmly within the territory of behavioral ecology, and do not draw upon those qualities that we might perceive as separating us from the rest of animate nature. [HINT: These are "qualities" like writing, SATs, and table manners, Dave]  Questions of human origins have now to be posed within the context of primate biology."

...
[Exit the chapter on Historical Perspectives demonstrating that there was NO pronouncement by any patriarchal authority, but that thought developed, changed, and changed back more than once as the evidence appeared.  Turn to Chapter 9 on Molecular Perspectives, which describes dated fossil finds and DNA data.]
...

"The shape of the hominoid tree according to the molecular evidence available in the early 1980s was therefore as follows: gibbons split away first, about 20 million years ago; orangutans next, about 15 million years ago; leaving humans, chimpanzees and gorillas in an unresolved three-way split, close to 5 million years ago. A three-way split of a lineage is biologically unlikely, and in this case it meant that the timing of the different divergences was so tightly bunched that none of the techniques was able to prise it apart with any confidence.

"Meanwhile, most morphologists had since the 1960s accepted the notion of a human/African ape clade, with an African ape clade existing within that. The expectation among molecular biologists, therefore, was that their data would confirm this pattern. showing that the common ancestor of humans and the African apes diverged to produce the human lineage on the one hand and an African ape lineage on the other, which then subsequently split to produce gorillas and chimpanzees.

[WOW, eh Dave? In the early 1980s, they were still expecting chimps to be closer to gorillas.  Do you think a certain amount of your "I wouldn't invite a chimp to dinner" thinking led to that expectation?  Kinda different then your idea that we have an innate, arrogant urge to convince everyone he's a monkey, eh?]

"It was therefore something of a surprise when, in 1984, Charles Sibley and Jon Ahlquist, then of Yale University, published data on DNA-DNA hybridization that strongly implied that chimpanzees are more closely related to humans than they are to gorillas. Gorillas evolved from the human/African ape common ancestor between 8 and 10 million years ago, they concluded, leaving humans and chimpanzees briefly sharing a common ancestory of their own, and splitting at between 6.3 and 7.7 million years ago."

Then we have a table, titled "Converging Evidence":

Time          Ape/human divergence date (millions of years)
                Fossils          Molecules
1980s         5-8                5-8
1970s         15                  5
1960s         30                  5

Then we have a tree, with Time -- Millions of years, illustrating:

Chimpanzee/Human: 5.5-7.7
Chimp/Human/Gorilla: 7.7-11.0
C/H/G/Orangutan: 12.2-17.0
C/H/G/O/Gibbon: 16.4-23

So, your question of how I arrived at my 1985 prediction, way back when?  Simple.  By 1985, molecular and fossil data had converged on a split between humans and other apes (i.e., chimps) at 5 million years ago (the number I used).  The gorilla estimate from 1989 was 7.7-11.0, but this included some of the new DNA techniques that we were supposed to be "predicting".  So I went with a ballpark around 8 mya, which was the upper end of the 5-8 mya range of the "convergence" between fossils and "molecules", nicely "between 5 and 15, but closer to 5" from early 1980s fossil discoveries, the lower end of the 8-10 mya range from the first 1984 foray into DNA technology (which I would have been rightly skeptical of, but intrigued, in 1985), and closest to the 5 mya for the "three-way-split" from established molecular studies.

That's where I got my dates for in my silly (but fun) little hypothetical exercise, Dave.  Don't you wish you could give an answer like that for your own arguments?  Something other than "it's obvious" or "imagine you went to dinner/bed/school with a chimp"?  Ever?

Quote
Incorygible...  
Quote
So if you want your stuff to be under the purview of science, you'd better give us those cold, hard facts and not pretty words.
I have, and I continue to do so, but you reject them.


Dave, rejection of analogies, arguments from incredulity and arguments from ignorance is not a rejection of facts.

Quote
These are definitely some tough questions.   I do not claim to have a definitive answer, but I don't think you do either.  You've made some assumptions and come up with a theory which says the universe is 15 by old  (or whatever the number is), but you cannot conclude anything definite.  I'm just saying that I think it is unwise to ridicule any theory about something we really don't have much information about.  I am not as sure about a young universe as I am about a young earth and a short human history.  Have you noticed that I have not made any claims about the age of the universe?  I admit I am merely speculating about that. But I also think there is really a God who has really revealed Himself through nature.  And I am humble enough to admit that maybe He knows some things about 'universe building' that I do not know.


They are tough questions, Dave.  But you're wrong -- I have absolutely no need to answer them.  That's your prerogative.  Since I don't believe life/the Earth/maybe the universe was created 6,000 years ago, I don't have to come up with a way to make reality fit inside my book.  Why there is starlight from a billion light years away fits just fine with my theories of the universe.  What about yours?

Oh, and you can't weasel out on the Universe thing:

Quote
Genesis 1:

1
In the beginning, when God created the heavens and the earth.

2
the earth was a formless wasteland, and darkness covered the abyss, while a mighty wind swept over the waters.

3
Then God said, "Let there be light," and there was light.

4
God saw how good the light was. God then separated the light from the darkness.

5
God called the light "day," and the darkness he called "night." Thus evening came, and morning followed--the first day.


Looks to me like the stars and the light were made on the first day, two days before the earth, eh?  Don't you even know your own books?

Date: 2006/06/21 10:06:12, Link 128.100.72.100
Author: incorygible
Dave, if you're going to go with the standard tapdance (i.e., Genesis 1 is written in the perspective and order of events for God or a third-person observer; and Genesis 2 is written in the perspective and order of events for Adam), please don't bother.  We've heard it before.  We know your position just as well as we know ours.  Try to catch up, eh?

Date: 2006/06/22 05:52:33, Link 128.100.72.100
Author: incorygible
Quote (Occam's Toothbrush @ June 22 2006,10:22)
Quote
a theoretical prediction: subject biomass to the right conditions of temperature and pressure for around a year, and you'll end up with fossil fuel.

So, all that's missing is the experimental verification.

Under the right conditions, it apparently takes a lot less than a year:http://en.wikipedia.org/wiki/Thermal_depolymerization

Not to support any of AFD's idiotic conjecture but he can't be wrong about everything...

Interesting.

Now we just have to figure out how a flood could (1) produce water heated to 250 degrees C in the first stage; (2) produce high concentrations of lime or carbon monoxide; (4) produce dry regions greater than 500 degrees C for the second stage; (4) transport the organic materials (100X the current biomass, right?) between superheated limed regions; (5) not boil, bake, dissolve or poison all those created kinds that didn't "need" the ark in the process (not to mention Noah and his bioboat); and (6) not superheat the very planet itself.

Over to you, Dave.

Date: 2006/06/26 03:49:00, Link 128.100.72.100
Author: incorygible
I love the smell of intellectual dishonesty on a Monday morning...

I returned from a nice long weekend at the cottage to find Dave had "responded" to my lengthy post of 21 June, in which, after being coninually hounded by Dave (despite the fact he claimed to have already read the book in question), I painstakingly typed many paragraphs of text, summarized what I didn't type, and showed in minute detail how I applied this information to arrive at the numbers I used in a fun little exercise testing the evolutionary hypothesis against Dave's "CGH" for their ability to predict ape phylogenies.  (For the lurkers, I encourage you to read my posts of 25 May and 21 June, among others, to see what Dave is actually "responding" to here -- it makes it all the sweeter and more obvious to see what a cowardly PoS Dave makes of himself.)

And without further ado...

Quote
Incorygible ... I read your extensive post which purports to show me WHY evolutionists believe in the millions of years thing for ape and human ancestry.  What it appears to boil down to is this ...

1) We have some fossils that look like human ancestors [Never mind that if we look at them really closely they either look like they are fully ape or fully human]
2) We've looked at the DNA and it is close [we've been through this - chimps are 0.5% or so closer to humans than gorillas are to chimps]
3) We know there couldn't possibly be a Creator God who made humans and apes as seprate kinds because ... well ... you know ... everyone knows that Genesis is just a nice Creation Myth
4) So humans and apes had to come about by natural processes -- no Intelligent Designer involved -- to say so would be unscientific !!!
5) Hmmm ... let's dream up a way that this could be explained ... Hey guys, remember Darwin?
6) Cool! Finches can change so maybe apes can change into humans!! Yippee! We're gettin' close to a solution!  So what's the mechanism?  Well mutations of course.  Voila!  Some of them add information (I think ... I hope ... isn't there something about some Nylon-eating bacteria that added info?  Yeah ... I'm sure of it ... Spetner was all wet on that debate ... sure of it)
7) How long does it take?  Well, a really long time because not too many mutations [only one that we can think of ... and even that is probably a farce] add information.  We'll have to tell everyone that it takes millions of years so they will believe us that it is possible.
8) OK. Now we are cookin'.  Let's do some math on the DNA so that it sounds really believable that we know what we are talking about, press the 'COMPUTE' button and PRESTO!!!  MAGICO!!!


The most polite thing I can say is that there's some interesting, unsupported exegesis, Davey.  More properly, it's laughable childish aping (yuk yuk) that wouldn't cut it on the playground, much less in any forum of rational adults.  I've been patient, meticulous, and honest with you, Dave (he11, I've even tried to be mostly polite). I've answered the questions you have asked in serious and time-consuming detail. This much is readily apparent. So, too, is the fact that your juvenile rant, which engages NONE of the actual content of my posts (both original and, by 'request', copied from sources you claim to have read), firmly establishes you as a jackass who doesn't deserve to be taken seriously in the slightest.

Dave, when it comes to our little debate, you lost it long ago.  When it comes to any resemblance to rational discourse, you lost it before we began.  Judging from your latest screed, I think now you are simply losing it.

Get help.  Get educated.  But not from or by me.  Adios.

Date: 2006/06/26 05:19:06, Link 128.100.72.100
Author: incorygible
My (I) “discussion” with Dave (D) in a nutshell, replacing ape phylogeny with one of Dave’s favorite analogies (i.e., “the sky is blue”):

D: I have SHOWN EVIDENCE of how God made the sky orange.

I: Er, Dave…you DO know the sky is blue, right?

D: What?! I’ve never heard or read anything that says the sky is blue!  Do them crazy scientists really believe this?

I: Dave, here are a few papers on Rayleigh scattering.  They show how longer wavelengths (e.g., orange at 600 nm) pass through atmospheric molecules, whereas shorter wavelengths (e.g., blue at 450-500 nm) are absorbed and scattered throughout the sky, making it appear blue.

D: NANOmetres?  NANO? As in 10^-9?  Oooohhh, look at this fancy evidence we evolutionists have! The sky looks blue because blue is different from orange by NANOmetres!!!  Nice fairy tale.

I: You know we can measure light in nanometers, right?  Very accurately?  You know we understand this process?  Here, let me show you.  We’ll evaluate the atmospheric composition and predict which wavelengths should pass through and which should be scattered.  Your “hypothesis” says orange should be scattered, whereas I say blue.  Let’s find out what the results are.  Oh, look at that: blue.  Not orange.  Blue.

D: Sure, there are differences in the wavelengths of light.  These differences can be attributed to intelligent design as much as commonly perceived spectra.

I: But why, exactly, does your “hypothesis” predict orange, and yet we observe blue?  Doesn’t that matter to you?

D: I haven’t actually looked into creationist photometry.  Besides, we’re talking NANOmetres here!  NANO!  By the way, you still haven’t told me why YOU believe the sky is blue.

I: Read those books on absorption and scattering I referenced.

D: You keep telling me to read your books.  I’ve read those books.  I know what they SAY.  But why do you believe it?

I: [Types a lot of text from elementary physics textbooks on the behavior of light. Types a lot more from chemistry textbook on the absorption spectra of atmospheric molecules.]  See, Dave, this is how I used what we know of physics and chemistry to retrospectively “predict” that the sky should appear blue.  It was a silly exercise, since millions of observations recording scattered light demonstrate that the majority of it is in the 450-500 nm range (and not the 600 nm range). Nevertheless, it shows where my theory predicts observed reality, and yours doesn’t.  Why do you still say the sky is orange?

D: Oh, evolutionists want the sky to be blue – they NEED it to be blue! After all, they can’t possibly accept the fact that God made it orange! It amounts to this:
1) We look at a bunch of photons that look to be blue [never mind that if we look at them really closely, they’re actually orange].
2) We’ve looked at the light up close [we’ve been through this – it’s whole NANOmetres closer to blue than orange].
3) We know that there couldn’t possibly be a Creator God who made the sky orange, because, well, you know, everyone knows that’s just a Creation Myth.
4) So let’s dream up some fancy physics and chemistry and math so it sounds like we really know what we’re talking about.  Even though we’re talking about NANOmetres, we can fool the public into buying our atheistic agenda!

Date: 2006/06/26 05:53:12, Link 128.100.72.100
Author: incorygible
Quote
I am a HUGE fan of archaeology because it is so supportive of the assertion of Biblical historicity.


I wonder if he's aware exactly how revealing this comment is, or how rich in subtle implication? Probably not, or he wouldn't have typed it.

Date: 2006/06/27 05:12:45, Link 128.100.72.100
Author: incorygible
Dr. Strangelove is good, k.e., but given it’s Dave, I prefer running with the Top Gun motif.  Especially after Dave bugged out from our little dogfight, blowing irrelevant inanity out his tailpipe like so much chaff.


Welcome to page 93: multiple encounters, multiple bogies. The hard deck for this hop is reason and evidence. There are no points for second place. Good luck, gentlemen…

***
Science: Good morning, gentlemen. The earth is 4.5 billion years old.
AFDave: Holy sh1t, it's Science!
Paley: Science's up here, great... oh sh1t...
AFDave: Great, he's probably saying, "Holy sh1t, it's Paley and Dave."
Paley: Yeah, I'm sure he's saying that.
***
AFDave: Paley, there’s Science!
Paley: Jesus is our wingman, Dave…
Jesus: Don’t you leave me, Dave…
AFDave: Paley, Jesus is okay. I WANT Science!  Jesus, you’re lookin’ good.  I’m goin’ after Science.
Jesus: #### it, Dave!
***
AFDave: What’s he doin’?
Paley: He’s goin’ for the hard deck, Dave.  Let’s drag ‘im down here first and nail him.
AFDave: No way, Science.  You’re mine!
***
AFDave: Yeeha, Darwin's dead! …What the… Paley, check our six.
Paley: Sh1t, it’s Science again.
Science: Game over, gentlemen.
Paley: The Department of Education regrets to inform you that your sons are dead because they were stupid.
Science: Gentlemen, get your butts above the hard deck and return to base.
***
Skeptic: Won this bullshit?
AFDave: Didn't everybody?
Thordaddy: #### no, man. We got our butts kicked.
Skeptic: Thirty seconds. We went like this, he went like that. I said to Thordaddy, "Where'd he go?" Thordaddy says, "Where'd who go?"
Thordaddy: Yeah, and he's laughing at us, right on the internet, he's laughing at us. Homo.
Rilke: That was me laughing, dickhead.
Wesley: Dave! Paley! Get your butts out of your clown gear and get upstairs to see Science. Now!
***
Science: Gentlemen, the hard deck for this thread was reason and evidence. You knew it, you broke it. You flew away from reason and evidence after the entire board called, “no joy”. Why?
AFDave: Sir, Captain Humphreys briefed me to fly well below the altitude of reason and evidence. Although I was unarmed and overmatched, my faulty radar convinced me geology was within my sights. I had the shot, there was no danger of learning anything, so I took it.
Science: You took it – and broke a major rule of engagement! Then you broke another one with that circus-stunt flyby!  Gentlemen, the rules of rational discourse are written for your enlightenment and for that of your team. They are not flexible, nor am I. Is that clear?
***
Paley: Well, that’s just great, Dave. Do you have the address of that moderated board?  Uncommon something I think it’s called? I might head over there.
AFDave: Paley, I’m sorry.  About that Portuguese thing…that was stupid.  I won’t do it again.
Paley: Sure, Dave. I know. Uncommon Descent, that’s it.  Wonder if they’ll like my model?  Goodness, gracious, great balls o’ fire.
***

Date: 2006/06/27 07:45:05, Link 128.100.72.100
Author: incorygible
Quote
Incorygible...
AFD:  Incorygible ... I read your extensive post which purports to show me WHY evolutionists believe in the millions of years thing for ape and human ancestry.  What it appears to boil down to is this ...

1) We have some fossils that look like human ancestors [Never mind that if we look at them really closely they either look like they are fully ape or fully human]


False. Easily demonstrated by the discordance amongst YECs themselves, nevermind actual paleontologists: http://www.talkorigins.org/faqs/homs/compare.html

   
Quote
2) We've looked at the DNA and it is close [we've been through this - chimps are 0.5% or so closer to humans than gorillas are to chimps]


True, give or take.  But STATISTICALLY SIGNIFICANT, which is a glaring lie of omission, considering your attempted spin.

   
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3) We know there couldn't possibly be a Creator God who made humans and apes as seprate kinds because ... well ... you know ... everyone knows that Genesis is just a nice Creation Myth


Irrelevant projection and unfalsifiable assertion.

   
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4) So humans and apes had to come about by natural processes -- no Intelligent Designer involved -- to say so would be unscientific !!!


Absent positive evidence for an Intelligent Designer (or any "non-natural" processes), the statement itself is true.  In context, as a motive for scientists, it is irrelevant projection.

   
Quote
5) Hmmm ... let's dream up a way that this could be explained ... Hey guys, remember Darwin?


Irrelevant, ranting, projection and false.  Evolution has been invoked as an explanation for the differences between humans, chimps and gorillas for over a century, long before genetics changed our minds about who is more closely related to whom.

   
Quote
6) Cool! Finches can change so maybe apes can change into humans!! Yippee! We're gettin' close to a solution!  So what's the mechanism?  Well mutations of course.  Voila!  Some of them add information (I think ... I hope ... isn't there something about some Nylon-eating bacteria that added info?  Yeah ... I'm sure of it ... Spetner was all wet on that debate ... sure of it)


WTF? Nonsensical, completely irrelevant and false. Finches played no greater role in ape phylogeny than beagles. Information has no context or relevance to ape phylogeny (unless you want to point to any specific "information-adding" mutation in any of the three lines?). The (recent) ability of bacteria to digest nylon was not involved in elucidating ape phylogeny for the past century. No evolutionary biologist cares about Spetner and his debunked garbage.

Quote
7) How long does it take?  Well, a really long time because not too many mutations [only one that we can think of ... and even that is probably a farce] add information.  We'll have to tell everyone that it takes millions of years so they will believe us that it is possible.


False and asinine. The earth was established as millions of years old LONG before questions of ape phylogeny.  And again, wtf with the nylon?

   
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8) OK. Now we are cookin'.  Let's do some math on the DNA so that it sounds really believable that we know what we are talking about, press the 'COMPUTE' button and PRESTO!!!  MAGICO!!!


Irrelevant projection, ranting and false. Little math is required to compare similarities and differences, though "computing" is helpful.  

   
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Now, Incorygible, you didn't like my post ... I see that.


True. That's how I respond when honesty and educational effort meets raving idiocy.

   
Quote
But my question is ... what part of it is inaccurate?


I count 5 outright falsehoods, one glaring lie of omission, one unfalsifiable assertion, and one true statement projected falsely as motive.  8/8 claims are therefore inaccurate.

   
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It's a little folksy, I admit.


If by "folksy" you mean false, irrelevant, asinine and a complete failure to engage the actual topic at hand.

   
Quote
But I think every piece of it is true, is it not?


You're kidding, right?  No, you're not, but whatever: this is your brain on Creationism.

   
Quote
How else do you come up with 8mya and 5mya for your supposed Ape Ancestor Splits?


Er...why not try re-reading that lengthy post you're supposedly responding to, eh?

   
Quote
I think I nailed it pretty close.


Sure you did, Davey.  Sure you did.  Exactly how close is on display for everyone to see.

Date: 2006/06/28 06:24:02, Link 128.100.72.100
Author: incorygible
AFDave...

   
Quote
HOW DO YOU COME UP WITH 8mya AND 5mya FOR CHIMPS AND GORILLAS?
OK, Incorygible.  You and Eric are obviously miffed that you spent all that time explaining this to me, only to have me throw cold water on your effort.  Well, I'm sorry, but the truth is the truth.  Better to give it to you straight and have you thank me on your deathbed, than blow sunshine at you and miss the truth forever.

Here's the deal ... best I can figure, here's how you guys come up with these numbers ... Darwin decided that Genesis was a fairy tale, so he went looking for an alternate explanation.  The finch thing gave him fodder to mix a little bit of truth with a little bit of speculation ... he suggested that the microevolution he saw in the finches might possibly extend to the whole animal kingdom and work for large scale changes.  Meanwhile in geology, scientists were tired of the church telling them what to believe and they decided Noah and the ark was a myth.  So now you have the geologists throwing Catastrophism out and preaching Uniformitarianism.  No evidence, mind you, but it was a fun theory. And the biologists threw out Creation and substituted Biological Evolution.  Again, no evidence of large scale change, but it was a fun theory.  Enter Spinoza, Astruc and Wellhausen who claimed that Genesis was mythology and your case is helped even more.  You see?  It used to be Creation and the Flood  to explain the natural world.  Then it became Uniformitarianism and Evolution.  Now Uniformitarianism required long ages to occur and so did Evolution.  This was a 'match made in heaven' and when radiometric dating and fossils came on the scene, ToE seemed more sure than ever. Pretty soon all the biologists were classifying all the animals according to supposed common ancestry and naturally apes were classified close to humans because they look somewhat similar.  When ape and human DNA was examined, guess what?  It was very similar.  Now where did the 8mya and 5 mya come from?  Well sequence differences of course.  The basic idea is that organisms change by mutations.  How long does it take to make a substantive change?  Well, there's some formula somebody came up with based on the ratio of beneficial mutations to total mutations, which is a very small number.  So basically the way it works (so the fairy tale goes) is that if humans and chimps have 20,000 different nucleotides and the beneficial mutation rate is 1 per 100 years, then you need 20,000 x 100 = 2 million years to go from chimp to human. (I'm just guessing the numbers here obviously, but I think the concept is close)

How about it, Incorygible, am I close?

Now this is a beautiful theory IF (there's that big word IF IF IF), you can really get these so called "beneficial mutations" at the rate of 1 per 100 years.  Problem is, you cannot.  We've tried with fruit flies over many generations and all we get is mutilated and dead fruit flies, not Super-fruit flies.  Mutations are incapable of producing the type of large scale change necessary to make a jellyfish from a bacteria, or a human from an ape-like ancestor.

Now there are of course many other problems with the theory, but I hope this sums up pretty well why I wanted Incorygible to explain where the 8 mya and 5 mya comes from.  I was pretty sure that this was the line of reasoning because it seems to be the only line of reasoning that COULD work.  But it doesn't.

Bottom line is that it's wishful thinking with no evidence to back it up.


No, Dave.  You are NOT close.  You merely demonstrate that a little spoonfed knowledge is a dangerous thing.

First, you begin with an unsubstantiated argument regarding the supposed ulterior motives of hundreds of thousands of scientists for more than a century. Exactly what evidence do you have for this claim, upon which much of your 'argument' rests?  A great many of these geologists and biologists that you contend were looking for ways in which to overthrow "the church" (which one?) were some of its most ardent supporters.  (Aren't you always going on about how many creationists were pioneers in science?  Guess what -- they were pioneers in geology and biology as well.  They just followed the evidence wherever it led.)

Second, your contention of "no evidence, but it was a fun theory" is, quite simply, ludicrous.  The evidence is there for all to see, Dave, unlike your projections of anti-religious motives.

Third, you make no mention of fossils (and the many various methods used to date them) and comparative morphology.  Now, there is a relative paucity of fossil evidence for the early apes, so I might almost be willing to overlook the first omission (although there is no excuse for omitting comparative morphology).  However, a scarcity of fossils doesn't help your argument at all.  Where are the early 'ape-kind' fossils buried in the flood?  We evolutionists expect such scarcity of ape fossils given the historical timeline of ape existence and environmental conditions of ape habitat, but you hypothesize a universal time in existence and universally similar conditions for fossil creation (i.e., one big flood).  Furthermore, I showed (and encouraged you to read even more about) how the fossils we do have and have dated converged with comparative morhphology and new genetic evidence in dating our LCA with the (other) great apes.

In any case, you focus on molecular clocks alone, which are indeed the best evidence we have available for elucidating phylogenies.  If you understood how they actually work, this might be acceptable.  But of course, you don't understand how they work.

Dave, modern molecular clocks have NOTHING to do with beneficial vs. detrimental mutations.  NADA.  You won't find a term for "beneficial mutation rate" in any of the calculations used to compare genomes and date ancestral events.  Why?  Because "beneficial mutation rate" is generally impossible to calculate (despite the fact that you seem to think you are able to).  To do so would require: almost omniscient knowledge of environmental conditions for the entire duration of evolutionary history; equally omniscient knowledge of all possible genotypes, phenotypes and their interactions; equally omnisicient knowledge of all selective pressures (natural, sexual, etc.) for the duration of evolutionary history; equally omnisicient knowledge of population demographies (and hence drift, founder effects, etc.); equally omniscient knowledge of all possible mutations that could occur and their frequencies; equally omnisicient knowledge of ecologies, food webs, competitive interactions and the evolution of other species with which apes interacted over the course of evolutionary history; and many other factors.  Hence, calculating rates of "beneficial" mutations is a fool's game.  Is that why you engage in it?

No, Dave, molecular phylogenetic research involves itself in calculating "beneficial mutation rates" about as much as it involves itself in investigating the Documentary Hypothesis: not one whit.  Go take a look at that table of genetic differences between chimps, gorillas and humans that I provided you way back when.  Rather than just looking at the numbers (less than 1%!;), look at what regions of DNA those numbers are reffering to.  Notice how they're broken up into two groups: noncoding and coding?  What do those terms mean to you, especially as they relate to "beneficial" mutations?  Can you guess which type we use in molecular clocks?  (And never forget clocks is plural, Dave.  Very plural.  Thousands of potential "clocks", all reading the same time.  If you're like me, you can't even get the clocks in your house to agree.)  Think about it, Dave.  Given the above impossibility in calculating the (always changing) rate of beneficial mutations in certain regions of DNA, how might we still employ a "clock" dependent on assuming relatively consistent rates of change?  Which regions of DNA might we prefer?  Why?  Any guesses?

As an example, I have used microsatellite analysis to trace the family history (e.g., paternity) of individuals and the evolutionary history of certain fish populations.  Go look up microsatellites, Dave, if you're actually interested in presenting an accurate picture of genetic research.  Look up mitochondrial DNA (mtDNA).  Look up other selectively neutral regions of DNA used in phylogenetic analyses (oops, did I let the cat out of the bag? were you still parsing the above questions?).

Learning this won't help you avoid your insistent need to project anti-religious motives onto the work and arguments of everyone who disagrees with you, but it may help you learn why the second part of your little synopsis is out of touch with actual science.

So, since we don't need to get any particular rate of beneficial mutation rate (we don't need any such rate at all), I presume you will agree (by your own words) that it is, indeed, a "beautiful theory".  Right?

Date: 2006/06/28 07:09:30, Link 128.100.72.100
Author: incorygible
Yet another "put-up-or-shut-up" challenge for AFDave

(To go similarly unanswered, I'm sure.)

Dave, in a round-about way, you have made a relatively simple contention regarding the differences between humans and (other) apes.  Simply put, you have argued we "can't get here from there", since (1) to do so would require a number of mutations that increased the "information" in the genome; and (2) such mutations do not occur (or occur so rarely as to be irrelevant as a mechanism in "ape-to-human" evolution).

So before we argue about (2), it's time for you to demonstrate (1).  To do that, you need to do the following:

i. Define "information". I don't care whether you follow Shannon or Kolmogorov, Safarti or Spetner.  Define it in a way that can be measured (else how do we know that it has increased?) and be consistent.
ii. Pick a genetic difference or mutation (ANY difference you wish) found in humans that is not found in chimps or gorillas. (You had better be able to show that this genetic difference is unique to humans.)
iii. Show that this genetic change involved an increase in information pursuant to your definition in (i).

That's it.  That's all it takes to demonstrate (1).  I don't think you can do it, but you had better try before we talk about (2).

Note that, despite your previous retreat, we ARE talking about MEASURABLE BIOLOGICAL DIFFERENCES here.  Your contention is based in measurable biological differences.  So if you want to talk about advanced communication skills, religion, civilization, or any of your other favourite "non-biological differences", you had better be able to reduce these to the genetic level and show the information content required.  Anything less is mere speculative hand-waving that has no bearing on YOUR contention.  (By the way, if you manage to do this, there's probably a Crawford prize with your name on it, or even a Nobel if your work can be shoehorned into Alfred's categories.)

For my part, I will give you the grace of not having to demonstrate that whatever uniquely human information-increase you come up with was not HISTORICALLY present (but later lost) from the (other) apes.  After all, we know A LOT of information was lost from the original kind, resulting in all these monkey-like things we see around us today, and there's no way to know if your apparently uniquely human mutation might be among it.  So I'll be generously satisfied with something that is found in humans but doesn't exist in the CURRENT apes.

Put up or shut up, Dave.

Date: 2006/06/28 07:51:47, Link 128.100.72.100
Author: incorygible
lucID's comment here:
regarding the Flank-Myers dust-up:

Quote
It’s a pity all that backstabbing doesn’t actually lead to someone’s death there.


What was that about "hateful thoughts" again?

Date: 2006/06/28 10:01:23, Link 128.100.72.100
Author: incorygible
Regarding the Universal Moral Code, there is a more basic amusement to be had at Dave's expense. I am (very) used to Creationist doublethink, but Dave's triplethink is highly entertaining. Somehow, he manages to squeeze or segment the following three ideas, each of which directly contradicts the other two, into one brain (for want of a better term):

1. There is a Universal Moral Code, common to all humans, which establishes that, among other things, the killing of children is wrong. This is "evidence" of the truth of (Dave's) Christian doctrine.

2. Killing children is not necessarily immoral: Dave would do so himself if instructed by his God or his government.

3. The WaiWai, presumably according to their own beliefs and leadership, wickedly killed their own children until Dave's daddy provided their salvation through direct indoctrination in Christian "love".

Just trying to resolve any one of the above ideas with any other gives me a headache.

Date: 2006/06/29 11:08:06, Link 128.100.72.100
Author: incorygible
AFDave:

   
Quote
The skeptic will say, "It's fine to use intuition on man-made machines because you can know something about the designer--man.  But you do not know anything about your supposed Intelligent Designer of Nature."  Well this is bogus and I showed it to be so with my example of the "Airplane and the Wai-wai Indians."  The Indians didn't know anything about airplanes or airplane designers, but when they saw one for the first time, they were able to make a fairly intelligent statement about it, namely, "Look, a sky canoe!  There must be an Expert Sky Canoe Builder somewhere who made this wonderful sky canoe!"


So let me get this straight...you argue that the difference between yourself (or at least humans who build airplanes) and the Wai-Wai is analogous to the difference between God (sorry, the Intelligent Designer of Nature) and yourself? You don't think that the Wai-Wai have firsthand knowledge of the design abilities of humankind that they can apply to the airplane problem?  That the creation of airplanes to the WaiWai is equivalent to the creation of all of nature to us?  Savages, eh, Dave?

   
Quote
Incorygible...  
   
Quote

Simply put, you have argued we "can't get here from there", since (1) to do so would require a number of mutations that increased the "information" in the genome; and (2) such mutations do not occur (or occur so rarely as to be irrelevant as a mechanism in "ape-to-human" evolution).

So before we argue about (2), it's time for you to demonstrate (1).  To do that, you need to do the following:

i. Define "information". I don't care whether you follow Shannon or Kolmogorov, Safarti or Spetner.  Define it in a way that can be measured (else how do we know that it has increased?) and be consistent.
ii. Pick a genetic difference or mutation (ANY difference you wish) found in humans that is not found in chimps or gorillas. (You had better be able to show that this genetic difference is unique to humans.)
iii. Show that this genetic change involved an increase in information pursuant to your definition in (i).

That's it.  That's all it takes to demonstrate (1).  I don't think you can do it, but you had better try before we talk about (2).

Actually, the burden is on YOU to prove that it COULD happen.  There has been no experimental data to my knowledge showing how this could be done.


You gotta be kidding me, Dave.  You made an argument.  I challenged you to demonstrate that the basis of that argument is even worth investigating (i.e., by showing that your claim was valid on its face).  Then you turn around and claim the burden of proof lies with me?  What a joke!  SHOW ME that what you contend happens at all (i.e., mutations requiring an "increase in information" are present in humans but not the other great apes), AND THEN I'll show you how it could happen.  Grow a pair.

   
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Here is why your head hurts ... you are leaving out the key ingredient that makes it all make sense ...

IN THE BEGINNING GOD ...

If you would accept that, then everything would fall in place beautifully for you.  The truth is, that your 'head was hurting' before you ever knew about me.  No human being can go through life denying the existence of his Creator and NOT have his head hurt at times.  Mankind was made to know his Creator.  And those who refuse to will have many headaches of all different kinds.

You see, if you believed in a Creator you would understand that ...

1) God made the universe and everything and everyone in it, so He makes the rules
2) The rules are made for mankind, not God
3) No one can argue sensibly with the Creator.  If he made everything, why can He not make any rules He wants to?

So here are the rules He made, and we have to live with, like it or not ...

* Murdering children is immoral for individuals, as is murdering any human
* Governments were authorized by God at times in the OT to destroy entire people groups including children because of extreme circumstances.
* Governments today are also authorized by God to destroy large numbers of people including children (Hiroshima and Nagasaki) under extreme circumstances.

Accepting this, note the following ...
1) The Wai-wai were immoral in killing their children b/c it falls under the Murder prohibition
2) Hiroshima and Nagasaki were not immoral b/c it falls under God-Ordained Government Killing.  Ditto for Joshua and Canaanites.
3) The Universal Moral Code exists and is evident in many ways, including the fact that all people everywhere view the killing of children as a horrible thing.

No headache at all, Incorygible.  But yes, BIG headache if you don't accept ...

IN THE BEGINNING GOD ...


Thanks for the patronizing evangelism, Dave. But you presume too much if you think I am not intimately familiar with Christianity (even your perverse breed thereof).  If there was anything going on in that head of yours, such contradictory, EVIL thoughts would bring on the migraines for you as well.  And I'm not about to ditch the facultative abilities that make my head hurt when I read this shit in favour of your particular God conceit.  Sorry.

But tell me:

Objectively, what separates "murder" from "God-ordained killing"? Objectively, what separates Joshua from a Wai-Wai elder?  Since you are emphatically willing to pull the trigger on an infant if your government, apparently a proxy for God, asks you to, please tell me you have some way of telling the difference between "murder" and "God-ordained", right?  Care to let us in on what it is?  How can you be sure you aren't deceived into "murder" though you believe it to be "God-ordained killing"?  How do you separate yourself from the anti-abortionist murderers who believe their evil to be "God-ordained"?  As you sit there with your finger on the trigger, are we supposed to simply take you at your word that you know "God-ordained" when you hear it?  Should we not fear the potential evil you are apparently so easily capable of?

By the way, note that whatever lofty, God-inspired status you apply to "governments" when it comes to killing, it is ALWAYS an individual with his or her finger on the trigger. How do you resolve this with, "murdering children is immoral for individuals, as is murdering any human". Can both God and governments give moral get-out-of-jail-free cards?  If so, why can't Wai-Wai elders or governments you don't support?

You state, "Hiroshima and Nagasaki were not immoral b/c it falls under God-Ordained Government Killing.  Ditto for Joshua and Canaanites." So am I to glean that you do not question any "Government Killing" throughout history?  Again, how can you know it's "God-Ordained"?  It seems to me your argument is that only atheist "governments" are capable of murder -- if gott mit uns, it's just killin'.  No wonder you guys are so adamant about portraying all the big baddies in history as atheists.

And again, if "all people everywhere view the killing of children as a horrible thing", do you (once again) imply that the WaiWai are less than people?  Where does racism stand in your Universal Moral Code?

Given your obvious superiority complex (actually, strike that, since you've come right out with the analogy -- it's a god complex) when it comes to the heathen WaiWai, might they not qualify as one of those "existing 'sub-human' cultures found in various parts of the world" that you would accept as evidence contradictory to Genesis?  If not, why not, since you obviously view them as sub-human?

Date: 2006/06/29 11:33:24, Link 128.100.72.100
Author: incorygible
Pop-quiz, Dave:

You are presented with a story.  Written in words, printed in ink, and everything.  It details how a government-sanctioned group of men from one country invaded another country and brutally massacred innocents to claim the land they believed their God had ordained to be their own.

1. Is this story:
(a) the Biblical account of Joshua and the conquest of Canaan?
(b) a recent newspaper account of modern-day Israeli-Palestinian conflict?
© an editorial account of American occupation of Afghanistan?
(d) a history textbook describing Holland under Nazi occupation during WWII?
(e) Frank Herbert's Dune?
(f) impossible to determine given the information available?

2. Is this action:
(a) only moral?
(b) only immoral?
© God-ordained and moral?
(d) God-ordained and immoral?
(e) fictitious?
(f) impossible to determine given the information available?

3. Short Answer: Why? If you answer (f) to either of the above questions, explain what information is necessary to adequately distinguish the context of the story and its subsequent moral lesson.

Date: 2006/06/30 09:06:14, Link 70.30.214.112
Author: incorygible
Quote
Wow ... you're a tough one to make happy.  What criteria?  Let's see ... how about whether the data are consistent with what I read in my history book - the Bible?  How do you argue with that?  Examples:  the Bible talks about Hittites.  We go out and do some digging and see if we can find Hittites.  Voila!  There they are.  The Bible talks about king Ahab of Israel.  Let's go dig ... Voila!  There he is on Shalmaneser's Stela ... and so on.  There have been literally HUNDREDS (maybe thousands) of finds confirming the historicity of the Bible.  And to me, some of the most spectacular ones are the finds in Mesopotamia confirming that civilization did in fact begin in Mesopotamia, and it was a very high level of civilization--neat architecture, agriculture, music, metallurgy, etc--just as my History Book (the Bible) said.


Excellent.  Now please apply the exact same process to C.S. Lewis's more lasting legacy.

Talks about England. Check.
Talks about wardrobes. Check.
Talks about Turkish Delight. Check.
Even talks about a world war...did that happen?  Yep!  Check, check, check!
Good enough for me...
Fantasy world in the closet. Must have been.
Christ-like lion vs. cold white witch.  Must have been.

Date: 2006/06/30 09:31:07, Link 70.30.214.112
Author: incorygible
Quote (afdave @ June 30 2006,14:19)
Incorygible...  
Quote
Excellent.  Now please apply the exact same process to C.S. Lewis's more lasting legacy.

Talks about England. Check.
Talks about wardrobes. Check.
Talks about Turkish Delight. Check.
Even talks about a world war...did that happen?  Yep!  Check, check, check!
Good enough for me...
Fantasy world in the closet. Must have been.
Christ-like lion vs. cold white witch.  Must have been.
 
Oops.  Small difference, there, buddy.  

My examples were not previously known OUTSIDE the Bible and there are many, many more.

Yours were.

Details.  Details.  

Who cares about details when you shooting your mouth off at Creos, huh?

(Pssst ... Incorygible ... how do you think those Mesopotamian archaeologists knew that there might be some cities to dig up?           Answer:  The Bible)

Details, details, indeed.

Come back in a few millennia and tell me what you know about our current nations, furniture, wars and foodstuffs. In other words, information freely available to the author may not be to a later reader, and the text may lead to many such "discoveries"

(Pssst...Dave...how do you think those Mesopotamian archaeologists knew that one of those cities might be Troy? Answer: The Iliad PRAISE ACHILLES!!!;)

Date: 2006/06/30 09:46:34, Link 70.30.214.112
Author: incorygible
Quote (deadman_932 @ June 30 2006,14:38)
Why aren't you responding to my comments on your lying, your demonstrably false prophecies and my question on how you constructed your 5000-year-old flood chronology, Dave?

And again, don't try to point me to some website that doesn't have precise methods by which the chronology was constructed.

I just figured out the answer to my similar chagrin at his lack of responsiveness.  Try asking him a random ethical question where he can try to demonstrate the God-ordained superiority of his moral outlook.  You'll get answers in spades.  (Anything science-y and, of course, ethical questions concerning lies you have unequivocally caught him telling don't seem to prompt the same level of engagement.)  Personally, I prefer tying him in knots with his own little analogies -- unsurprisingly, Dave seems to have a bit of trouble navigating the murky waters between the literal and the figurative.

Date: 2006/06/30 14:30:08, Link 70.30.214.112
Author: incorygible
I think orangutans have been recognized as a definitive outgroup to the African apes and humans for over a century.  While we were shuffling around our ideas about chimps, gorillas and humans, they were never in contention (no matter how far back and forth the pendulum of ideas swung).

Date: 2006/08/02 04:48:38, Link 70.30.214.112
Author: incorygible
Quote

Barrett1: What have you experienced at the hands of scientific materialists? Are you aware of the Sternberg case? The pressures directed against frontline ID proponents are real. From your armchair, it is easy enough to say that we need simply to get to work. But families and livelihoods really are under threat by these Darwinian fascists, and when our days are spent trying to shore up the latter, the former does not get done.

Comment by William Dembski — August 2, 2006 @ 8:43 am


Bwahahahaha!  Break out the violins, folks!

(By the way, can anyone decipher what he is referring to by the "former" and the "latter"?  I have it as "when our days are spent trying to shore up [families], [livelihoods] does not get done"?!;)

Date: 2006/08/02 05:02:41, Link 70.30.214.112
Author: incorygible
No worries, keiths.  Guess we were both neck-and-neck, handicapped by rolling around on the floor.

In case others are wondering exactly what odious persecution now threatens Dr. Bill, please enable the bypass function on all irony meters now.

The latest "threat" posed by the "Darwinian fascists" is a suspect, anonymous email (likely a prank) to Dr. Bill containing the hard-luck story of a "student" supposedly flunked by a "prominent anti-ID proponent" (sounds like it's supposed to be PZ) for demonstrating the existence of ID via a computer model for an undergraduate evo-devo class.  Our brave and wise hero, at great risk to his family and livelihood, apparently declined to call Homeland Security (this time), for which he is receiving pats on the back among the faithful for narrowly avoiding such a sinister and insidious trap.

Bwahahaha!

Date: 2006/08/02 07:06:04, Link 70.30.214.112
Author: incorygible
Who is going to own up to this one, I wonder?  And from which side?

Date: 2006/08/08 13:42:05, Link 70.30.214.112
Author: incorygible
Quote (Apoptosis @ Aug. 08 2006,18:08)
I am a total lurker both here and at uncommonly dense (among other places) but just wanted to hit home the fact that they are now quoting Roughgarden with great approval. Roughgarden's screeds are reactionary tombs mostly aimed at ev. psych (for purposes of full disclosure I am involved in ev psych and my advisor was one of the people she aimed attacks at). The most interesting point in all this is that Roughgarden decries all gender roles and sexual orientations. I can't imagine any of her/his wittings (I forgot which direction the sex change went, I think it was man to woman, Denyse O'leary probably knows) would appeal to the IDiot zealots. But I guess they have to scramble for any source they can get.

:D  My advisor wasn't so much attacked by her, but his work on alternative mating strategies was certainly ... massaged ... shall we say to fit her notions. He (my advisor) was remarkably diplomatic and said nothing at a recent departmental seminar she gave, but I don't think he was very impressed.  Her talk was quite the circus.  At first I was rather appalled at the mocking water-cooler chatter I heard that week.  Of course, at that point, I only knew the excellent pop. gen. / ecol. work of John Roughgarden.  Then I met Joan.  What a...talk.

Date: 2006/08/10 06:58:16, Link 128.100.72.100
Author: incorygible
Quote
Incorygible was not able to come up with anything believable about the supposed age of the LCA for apes and humans -- all he had was Smoke and Mirrors.


Thanks for making me spit out my much-needed coffee, Davie-boy.

I ceased engaging your dishonest bullshit long ago, but please, by all means, feel free to link to my "smoke and mirrors" in the first half of this ridiculous thread.  Show us how you revealed the spindly, impotent man behind the curtain of thousands of papers (dozens of which I referenced and summarized for you, back when I held slim hope that you had two neurons to rub together), mulitiple lines of evidence, and every pedagogical tool in my repertoire. It was something along the lines of, "ha ha, 1%?! look at this picture of Dawkins and a gorilla!", wasn't it?  Go ahead and back up that mud-raking, Davey -- I'm shaking in my boots.

Or were you hoping that the passage of time and my absence from this thread would let you get away with puffed-up claims of victory? We've certainly seen that tactic before by your ilk.

You're truly an ass, Dave. How's that for something "believable"?

Date: 2006/08/10 10:11:57, Link 128.100.72.100
Author: incorygible
Quote (afdave @ Aug. 10 2006,12:43)
I'm not interested in getting a geology degree ... by an internet flame war or any other way ...

I'm interested in showing that those who DO have geology degrees are grotesquely mistaken when they say that sedimentary rock layers were laid down over millions and millions of years by the same well-understood processes which are in operation today (the present is the key to the past) ...

Like every Creobot before him, we see the usual "I don't know shit about it, but I know it's wrong!" (Stevestory is shuddering, jaw agape, somewhere.)

And after Dave "shows" that geologists don't know shit about rock layers, he'll move onto (another Dave's famous) "biologists don't know shit about life and cellular processes", probably follow that up with "physicists and astronomers don't know shit about about cosmology", take a brief detour (to return the favour for a recent endorsement) to engage Dembski's critics by claiming "mathematicians don't know shit about numbers and probabilities", then move on to the more esoteric wonders of YEC paranoia, like "doctors don't know shit about medicine -- I don't want no vaccines, and you can't show me HIV causes AIDS!". We have another polymath on ou